Factsheet for Bra040839.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000736.1-P
Bra003068.1-P
Bra003462.1-P
Bra004548.1-P
Bra010389.1-P
Bra012352.1-P
Bra013730.1-P
Bra016367.1-P
Bra019270.1-P
Bra022643.1-P
Bra023876.1-P
Bra025394.1-P
Bra026295.1-P
Bra029079.1-P
Bra036215.1-P
Bra040839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27950.1	Bra012352.1-P	AT1G22985.1	21705390
AT4G27950.1	Bra016367.1-P	AT1G22985.1	21705390
AT4G27950.1	Bra004548.1-P	AT2G46310.1	21705390
AT4G27950.1	Bra023876.1-P	AT3G21510.1	21705390
AT4G27950.1	Bra025394.1-P	AT3G29350.1	21705390
AT4G27950.1	Bra036215.1-P	AT3G29350.1	21705390
AT4G27950.1	Bra003462.1-P	AT3G61630.1	21705390
AT4G27950.1	Bra000736.1-P	AT4G11140.1	21705390
AT4G27950.1	Bra013730.1-P	AT4G23750.1	21705390
AT4G27950.1	Bra019270.1-P	AT4G23750.1	21705390
AT4G27950.1	Bra010389.1-P	AT4G27950.1	21705390
AT4G27950.1	Bra026295.1-P	AT4G27950.1	21705390
AT4G27950.1	Bra040839.1-P	AT4G27950.1	21705390
AT4G27950.1	Bra003068.1-P	AT5G53290.1	21705390
AT4G27950.1	Bra022643.1-P	AT5G53290.1	21705390
AT4G27950.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29870	Canola	nucleus	100.0	100.0
Bra010389.1-P	Field mustard	nucleus	73.23	72.56
Bra026295.1-P	Field mustard	nucleus	73.85	71.22
AT4G27950.1	Thale cress	nucleus	72.62	70.45
Bra029079.1-P	Field mustard	nucleus	47.69	45.19
Bra022643.1-P	Field mustard	nucleus	48.92	45.17
Bra003068.1-P	Field mustard	nucleus	48.92	43.68
Bra012352.1-P	Field mustard	nucleus	19.08	42.18
Bra003936.1-P	Field mustard	nucleus	21.23	41.82
Bra016367.1-P	Field mustard	nucleus	20.0	41.14
Bra007963.1-P	Field mustard	nucleus	20.92	40.72
Bra003462.1-P	Field mustard	nucleus	29.54	33.92
Bra019270.1-P	Field mustard	nucleus	31.69	33.23
Bra004548.1-P	Field mustard	nucleus	26.77	32.34
Bra013730.1-P	Field mustard	nucleus	30.77	31.75
Bra000736.1-P	Field mustard	nucleus	23.69	28.21
Bra033923.1-P	Field mustard	nucleus	20.62	21.2
Bra004033.1-P	Field mustard	nucleus	20.0	20.5
Bra004318.1-P	Field mustard	nucleus	19.08	20.39
Bra036360.1-P	Field mustard	nucleus	17.54	20.28
Bra025170.1-P	Field mustard	nucleus	17.85	18.24
Bra024743.1-P	Field mustard	plastid	18.15	17.66

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra040839	EnsemblPlants:Bra040839.1
EnsemblPlants:Bra040839.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4FIB0	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00025461B1	SEG:seg

Description

AT4G27950 (E=4e-083) CRF4 | CRF4 (CYTOKININ RESPONSE FACTOR 4); DNA binding / transcription factor

Coordinates

chrA08:-:12066112..12067089

Molecular Weight (calculated)

36936.1 Da

IEP (calculated)

4.587

GRAVY (calculated)

-0.632

Length

325 amino acids

Sequence
(BLAST)

001: MMMDEYMDFR PVKYTEHKKV IKKYTKKLPV EENKRKNSTG RDSARLVRVC VMDGDATDSS SDDEEEFMFP RRRVKRLINE IRVEPSSSSS GEVSALAAVD
101: SPPQMVSVSG ADQNQKKFRG VRRRPWGKYA AEIRDPVQRR RIWLGTFSTA EEAAVVYDNA AIRLRGPDAL TNFTVPPKPE PEPDRESNVS VYSTSESVED
201: SHHHLSSPTS VLNYHIPEPV DEPVKPVKQE FIEPEPISCH LDEVYNSFPL DITFPDNYFT ETLEDISIFD QSMSPIQSSE SNFFDDLMLF DNSNIGGESY
301: SSKMKEIGSI FNDLDDSLIS ELLVV

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.