Factsheet for Bra012352.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000736.1-P
Bra003068.1-P
Bra003462.1-P
Bra003936.1-P
Bra004548.1-P
Bra007963.1-P
Bra012352.1-P
Bra013730.1-P
Bra016367.1-P
Bra019270.1-P
Bra022643.1-P
Bra023876.1-P
Bra025394.1-P
Bra029079.1-P
Bra036215.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22985.1	Bra012352.1-P	AT1G22985.1	21705390
AT1G22985.1	Bra016367.1-P	AT1G22985.1	21705390
AT1G22985.1	Bra003936.1-P	AT1G71130.1	21705390
AT1G22985.1	Bra007963.1-P	AT1G71130.1	21705390
AT1G22985.1	Bra004548.1-P	AT2G46310.1	21705390
AT1G22985.1	Bra023876.1-P	AT3G21510.1	21705390
AT1G22985.1	Bra025394.1-P	AT3G29350.1	21705390
AT1G22985.1	Bra036215.1-P	AT3G29350.1	21705390
AT1G22985.1	Bra003462.1-P	AT3G61630.1	21705390
AT1G22985.1	Bra000736.1-P	AT4G11140.1	21705390
AT1G22985.1	Bra013730.1-P	AT4G23750.1	21705390
AT1G22985.1	Bra019270.1-P	AT4G23750.1	21705390
AT1G22985.1	Bra003068.1-P	AT5G53290.1	21705390
AT1G22985.1	Bra022643.1-P	AT5G53290.1	21705390
AT1G22985.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70837	Canola	nucleus	97.96	97.96
Bra016367.1-P	Field mustard	nucleus	74.83	69.62
AT1G22985.1	Thale cress	nucleus	69.39	64.15
Bra003936.1-P	Field mustard	nucleus	61.9	55.15
Bra007963.1-P	Field mustard	nucleus	61.9	54.49
Bra004548.1-P	Field mustard	nucleus	40.82	22.3
Zm00001d034605_P001	Maize	nucleus	36.05	22.27
Bra019270.1-P	Field mustard	nucleus	46.94	22.26
EER90653	Sorghum	nucleus	36.05	22.08
Bra003462.1-P	Field mustard	nucleus	42.18	21.91
Bra013730.1-P	Field mustard	nucleus	46.26	21.59
Os03t0815800-01	Rice	nucleus	35.37	21.58
Bra029079.1-P	Field mustard	nucleus	46.94	20.12
Bra022643.1-P	Field mustard	nucleus	46.26	19.32
Bra040839.1-P	Field mustard	nucleus	42.18	19.08
Bra003068.1-P	Field mustard	nucleus	46.94	18.96
Bra010389.1-P	Field mustard	nucleus	42.18	18.9
Bra026295.1-P	Field mustard	nucleus	42.86	18.69
Bra000736.1-P	Field mustard	nucleus	32.65	17.58
Bra036360.1-P	Field mustard	nucleus	30.61	16.01
Zm00001d019216_P001	Maize	nucleus	27.89	15.71
Bra033923.1-P	Field mustard	nucleus	33.33	15.51
Bra004318.1-P	Field mustard	nucleus	31.97	15.46
TraesCS5D01G481700.1	Wheat	nucleus	33.33	15.41
HORVU5Hr1G111550.1	Barley	nucleus	34.01	14.88
Zm00001d005203_P001	Maize	nucleus	29.25	14.78
Bra004033.1-P	Field mustard	nucleus	31.29	14.51
TraesCS5B01G481300.1	Wheat	nucleus	34.01	14.24
Bra025170.1-P	Field mustard	nucleus	30.61	14.15
TraesCS5A01G468800.1	Wheat	nucleus	34.01	13.81
Bra024743.1-P	Field mustard	plastid	29.93	13.17
KXG34718	Sorghum	nucleus	29.25	12.5

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra012352
EnsemblPlants:Bra012352.1	EnsemblPlants:Bra012352.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4D792	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000254141E	SEG:seg	:	:	:	:

Description

AT1G22985 (E=9e-038) | AP2 domain-containing transcription factor, putative

Coordinates

chrA07:+:8290723..8291166

Molecular Weight (calculated)

16081.1 Da

IEP (calculated)

10.657

GRAVY (calculated)

-0.619

Length

147 amino acids

Sequence
(BLAST)

001: MKRVVRISFT DVEATDSSSS EDDQTNTESP SPRKGKRFVK EIVIDPSDSA EVRKTRFKIR IPARLTKKIR GVRQRPGGKW AAEIRCGKAH GGIRNGGPVR
101: LWLGTFETAE EAALAYDKAA IRLIGPHAPI NFGPESPAVK QDSVAGD

Best Arabidopsis Sequence Match ( AT1G71130.1 )
(BLAST)

001: MKRIIRISFT DAEATDSSSD EDTEERGGAS QTRRRGKRLV KEIVIDPSDS ADKLDVCKTR FKIRIPAEFL KTAKTEKKYR GVRQRPWGKW VAEIRCGRGA
101: CKGRRDRLWL GTFNTAEEAA LAYDNASIKL IGPHAPTNFG LPAENQEDKT VIGASEVARG A

Arabidopsis Description

ERF070Ethylene-responsive transcription factor ERF070 [Source:UniProtKB/Swiss-Prot;Acc:Q9C995]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.