Factsheet for HORVU5Hr1G111550.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G111550.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22985.1	HORVU5Hr1G111550.1	AT1G22985.1	21705390
AT1G22985.1	HORVU5Hr1G111550.1	AT1G71130.1	21705390
AT1G71130.1	HORVU5Hr1G111550.1	AT1G22985.1	21705390
AT1G71130.1	HORVU5Hr1G111550.1	AT1G71130.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G481700.1	Wheat	nucleus	78.87	83.33
TraesCS5B01G481300.1	Wheat	nucleus	86.01	82.34
TraesCS5A01G468800.1	Wheat	nucleus	85.71	79.56
Os03t0815800-01	Rice	nucleus	40.48	56.43
EER90653	Sorghum	nucleus	38.1	53.33
Zm00001d034605_P001	Maize	nucleus	36.9	52.1
Zm00001d005203_P001	Maize	nucleus	34.82	40.21
Zm00001d019216_P001	Maize	nucleus	30.36	39.08
KXG34718	Sorghum	nucleus	36.61	35.76
CDY70837	Canola	nucleus	14.88	34.01
Bra012352.1-P	Field mustard	nucleus	14.88	34.01
CDY09516	Canola	nucleus	15.48	31.71
CDX68325	Canola	nucleus	15.48	31.52
CDY49223	Canola	nucleus	15.48	31.52
Bra003936.1-P	Field mustard	nucleus	15.48	31.52
CDY66105	Canola	nucleus	15.48	31.14
Bra007963.1-P	Field mustard	nucleus	15.48	31.14
CDY12500	Canola	nucleus	14.29	30.97
AT1G22985.1	Thale cress	nucleus	14.58	30.82
AT1G71130.1	Thale cress	nucleus	14.58	30.43
CDY41468	Canola	nucleus	14.29	30.38
CDX91694	Canola	nucleus	13.99	29.19
Bra016367.1-P	Field mustard	nucleus	13.69	29.11
HORVU6Hr1G048930.1	Barley	nucleus	12.2	21.58
HORVU3Hr1G059250.1	Barley	nucleus	17.56	20.0
HORVU3Hr1G030310.1	Barley	nucleus	17.86	17.0
HORVU4Hr1G023110.1	Barley	nucleus	19.05	16.67
HORVU5Hr1G055190.2	Barley	nucleus	13.99	15.21
HORVU0Hr1G013910.2	Barley	cytosol, plastid	6.25	10.05

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AK356841	EMBL:AK363180	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	UniProt:F2CYY5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:HORVU5Hr1G111550	EnsemblPlants:HORVU5Hr1G111550.1	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF82	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00020054BD
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CYY5]

Coordinates

chrchr5H:-:636696266..636698250

Molecular Weight (calculated)

36082.3 Da

IEP (calculated)

10.144

GRAVY (calculated)

-0.599

Length

336 amino acids

Sequence
(BLAST)

001: MGPNPSLDML AAAAAAEAAP PPRGRVVRII VHDADATDSS SSEDEAAPPP LLAMPTTKEE RRRDRKKRRR VMEAGRREDS RPPQAGGRTP SVRYRGVRQR
101: RWGKFASEIR DPIQGRRLWL GTFDTAEEAA AAYDAAKIRI SGSRRPPDAT TTTTTTGCFP FPFPPPEPPK PTVLRLPMPH PAKPTVLRLP MSQTAKPIVS
201: PPPPPSPEPV KPAISPPPLP AKPFALPLKL RLKLSFNPQV KDKGWGWCSA GDVKEEEDVG CDGEAKVGDV ISAGEVKVED GGCAEEAKEV GGNSEIQAVK
301: PMWAMITGKR KKRSGCGTRV GALHASSVCV EEVGGT

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.