Factsheet for HORVU3Hr1G030310.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G157100.1	Wheat	nucleus	92.63	93.97
TraesCS3B01G176200.1	Wheat	nucleus	93.2	93.73
TraesCS3A01G149000.1	Wheat	nucleus	93.2	93.73
Os01t0224100-01	Rice	nucleus	65.44	60.79
Zm00001d039324_P001	Maize	nucleus	60.91	60.73
Zm00001d008968_P001	Maize	nucleus	55.24	60.0
KXG31528	Sorghum	nucleus	62.89	56.63
GSMUA_Achr2P19950_001	Banana	nucleus	33.99	43.96
GSMUA_Achr6P14240_001	Banana	nucleus	33.99	42.86
GSMUA_Achr10P...	Banana	nucleus	37.11	42.81
GSMUA_Achr8P19850_001	Banana	nucleus	39.94	42.22
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	35.69	40.38
HORVU3Hr1G059250.1	Barley	nucleus	31.44	37.63
HORVU6Hr1G048930.1	Barley	nucleus	11.33	21.05
HORVU4Hr1G023110.1	Barley	nucleus	22.1	20.31
HORVU5Hr1G055190.2	Barley	nucleus	16.43	18.77
HORVU5Hr1G111550.1	Barley	nucleus	17.0	17.86
HORVU0Hr1G013910.2	Barley	cytosol, plastid	6.52	11.0

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AK369008	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
UniProt:F2DYN9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU3Hr1G030310
EnsemblPlants:HORVU3Hr1G030310.1	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000200756E	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DYN9]

Coordinates

chrchr3H:-:144210999..144212802

Molecular Weight (calculated)

38455.4 Da

IEP (calculated)

4.363

GRAVY (calculated)

-0.481

Length

353 amino acids

Sequence
(BLAST)

001: MWPMEEEFFM AVKRTEHVEV TSRSLAASAT GMEGFGGGVE QPKMVRVFCD DFDATDSSSD EEDGERRRVK RYVQEIRLQP AVQVKVEESA PVAKAASATA
101: TATRPRVMVP VRKRKAEAGG ERRFRGVRRR PWGKYAAEIR DPWRRVRVWL GTFDTAEEAA KVYDSAAIKL RGPDATVNFQ QSEDGEDMEV PAEVAERLPQ
201: PPAGSKNSST SATSYDSCEE SHVAAASPTS VLRSFPQSTL PAAVDGDTAK KPSSSSSTAE TDESSGVFGC SFSGDDFAGE LAPLYSDFDL LSDFAEPPMD
301: FLSNLPEPAF AFTSDCSSSA FQPCPPSPAA LQQADEFFQD ITDLFQIDPL PVI

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.