Factsheet for HORVU4Hr1G023110.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G120200.1	Wheat	nucleus	67.71	85.25
TraesCS4A01G193100.1	Wheat	nucleus	67.97	84.47
TraesCS4B01G122100.1	Wheat	nucleus	69.53	80.91
HORVU6Hr1G048930.1	Barley	nucleus	37.24	75.26
Zm00001d052365_P001	Maize	nucleus	22.14	39.35
OQU82736	Sorghum	nucleus	23.7	37.92
GSMUA_Achr7P21980_001	Banana	nucleus	19.53	30.36
GSMUA_Achr4P16600_001	Banana	nucleus	19.27	29.96
Solyc06g082590.1.1	Tomato	nucleus	18.75	29.03
PGSC0003DMT400078294	Potato	nucleus	18.49	28.63
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	18.23	25.93
VIT_06s0004g08190.t01	Wine grape	nucleus	18.49	24.91
KRH30664	Soybean	nucleus	16.93	23.9
HORVU3Hr1G059250.1	Barley	nucleus	17.97	23.39
KRH72836	Soybean	nucleus	16.15	22.88
KRH17205	Soybean	nucleus	16.67	22.7
GSMUA_Achr8P01690_001	Banana	nucleus	16.15	22.22
HORVU3Hr1G030310.1	Barley	nucleus	20.31	22.1
HORVU5Hr1G111550.1	Barley	nucleus	16.67	19.05
KRG98122	Soybean	nucleus	11.2	18.61
HORVU0Hr1G013910.2	Barley	cytosol, plastid	8.59	15.79
HORVU5Hr1G055190.2	Barley	nucleus	12.24	15.21

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A287NJC8	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU4Hr1G023110
EnsemblPlants:HORVU4Hr1G023110.1	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000B477ABE
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:123873940..123875716

Molecular Weight (calculated)

40391.8 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.331

Length

384 amino acids

Sequence
(BLAST)

001: SCTLFYTSPI PISHSGTPPL CLQVEIEREA RNPIQSFLSL KPSQNHHTQQ ENSANPSPAD EIGACCCQLS PVMDGCWRLP GGHGGAAAAG RVLRVHFLDA
101: DATDDSDEET SQLQRRGARR CVREIGLPPA SFHLPSAAAG AVSSSSHWTR QKRLRAAAAG KTRTLVAGGE DDWYPGTTAA RRFRGVRRRP WGKWASEIRD
201: PKQGRRVWLG TFDTAEEAKS VYDSAVVRLR GPGAVSNAIA RSPSPPLSTV TASVPSPSTS AASPPLPSTT AVSPPSLFAT AASPPVPSTT AASPTSPSTT
301: AASPPSPSTT AASQSAATTS WSLVNADEEV TAAFGMGFVD EETSLNNLMQ FCLPATCSSR WDPSADFVEL ADLDDLFAPE PLSA

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.