Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P21980_001 | Banana | nucleus | 50.0 | 54.66 |
| GSMUA_Achr4P16600_001 | Banana | nucleus | 45.93 | 50.2 |
| GSMUA_Achr8P01690_001 | Banana | nucleus | 49.63 | 48.03 |
| PGSC0003DMT400078294 | Potato | nucleus | 38.52 | 41.94 |
| Solyc06g082590.1.1 | Tomato | nucleus | 38.15 | 41.53 |
| VIT_06s0004g08190.t01 | Wine grape | nucleus | 39.63 | 37.54 |
| KRH30664 | Soybean | nucleus | 35.93 | 35.66 |
| KRH17205 | Soybean | nucleus | 37.04 | 35.46 |
| KRH72836 | Soybean | nucleus | 34.44 | 34.32 |
| GSMUA_Achr9P28840_001 | Banana | nucleus | 35.93 | 32.88 |
| GSMUA_Achr6P14240_001 | Banana | nucleus | 33.33 | 32.14 |
| GSMUA_Achr2P19950_001 | Banana | nucleus | 31.48 | 31.14 |
| GSMUA_Achr7P10720_001 | Banana | nucleus | 34.44 | 31.1 |
| Os05t0316800-01 | Rice | nucleus | 32.22 | 30.96 |
| GSMUA_Achr6P32030_001 | Banana | nucleus | 32.22 | 30.31 |
| GSMUA_Achr10P... | Banana | nucleus | 32.22 | 30.31 |
| GSMUA_Achr9P05260_001 | Banana | nucleus | 32.59 | 30.14 |
| GSMUA_Achr10P... | Banana | nucleus | 34.07 | 30.07 |
| KRG98122 | Soybean | nucleus | 25.56 | 29.87 |
| GSMUA_Achr7P14200_001 | Banana | nucleus | 31.11 | 29.27 |
| OQU82736 | Sorghum | nucleus | 25.93 | 29.17 |
| Zm00001d052365_P001 | Maize | nucleus | 23.33 | 29.17 |
| GSMUA_Achr10P... | Banana | nucleus | 30.74 | 28.33 |
| GSMUA_Achr8P19850_001 | Banana | nucleus | 34.07 | 27.54 |
| TraesCS5D01G433100.1 | Wheat | nucleus | 29.63 | 27.3 |
| TraesCS5B01G426600.1 | Wheat | nucleus | 29.63 | 27.21 |
| KXG33839 | Sorghum | nucleus | 30.37 | 27.06 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 31.11 | 26.92 |
| Zm00001d042588_P001 | Maize | nucleus | 29.63 | 26.76 |
| TraesCS5A01G424600.1 | Wheat | nucleus, plastid | 28.15 | 26.03 |
| GSMUA_Achr9P19330_001 | Banana | mitochondrion | 21.85 | 23.79 |
| GSMUA_Achr4P06840_001 | Banana | nucleus | 22.22 | 23.62 |
| TraesCS4A01G193100.1 | Wheat | nucleus | 25.93 | 22.65 |
| GSMUA_Achr4P13800_001 | Banana | nucleus | 22.59 | 22.43 |
| TraesCS4D01G120200.1 | Wheat | nucleus | 25.19 | 22.3 |
| TraesCS4B01G122100.1 | Wheat | nucleus | 25.19 | 20.61 |
| GSMUA_Achr1P23090_001 | Banana | nucleus | 21.85 | 20.27 |
| HORVU6Hr1G048930.1 | Barley | nucleus | 12.96 | 18.42 |
| HORVU4Hr1G023110.1 | Barley | nucleus | 25.93 | 18.23 |
| GSMUA_Achr10P... | Banana | vacuole | 25.19 | 11.53 |
| HORVU0Hr1G013910.2 | Barley | cytosol, plastid | 7.04 | 9.09 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G27850_001 | EnsemblPlants:GSMUA_Achr5P27850_001 |
| EnsemblPlants:GSMUA_Achr5T27850_001 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0T2B0 | PFAM:PF00847 | PIRSF:PIRSF038123 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF18 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI000295689A | SEG:seg | : | : | : | : |
Description
Putative Pathogenesis-related genes transcriptional activator PTI6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G27850_001]
Coordinates
chr5:+:28290980..28291792
Molecular Weight (calculated)
29471.4 Da
IEP (calculated)
6.527
GRAVY (calculated)
-0.473
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPTAVVRGN RGAAALDAPL KFSEHVASSR KTAPAAASSR RRRVVRIHCT DVDATDSSSS DDEEDAGPTC RRVKRHVQEI GIEAAPRRAP PERPPAAATD
101: PCGWKRFRGV RRRPWGRWAA EIRDPTLRKR VWLGTFDTAE EAAAVYDAAA MKLKGAKAVT NFPVMKTVTV DSSESSCARD DVSDNPFPSP TSVLRNNADQ
201: TPFDFLGYGE VDAFGLRVDP PLYITDFYLP HRPSVEAAGD GFSEFDADDF MLEVVTLESF SSPAKTSAVL
101: PCGWKRFRGV RRRPWGRWAA EIRDPTLRKR VWLGTFDTAE EAAAVYDAAA MKLKGAKAVT NFPVMKTVTV DSSESSCARD DVSDNPFPSP TSVLRNNADQ
201: TPFDFLGYGE VDAFGLRVDP PLYITDFYLP HRPSVEAAGD GFSEFDADDF MLEVVTLESF SSPAKTSAVL
001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
Arabidopsis Description
CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.