Factsheet for GSMUA_Achr10P21940_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P14200_001	Banana	nucleus	73.38	74.91
GSMUA_Achr8P19850_001	Banana	nucleus	67.24	58.98
GSMUA_Achr6P14240_001	Banana	nucleus	56.31	58.93
GSMUA_Achr9P28840_001	Banana	nucleus	57.0	56.61
GSMUA_Achr10P...	Banana	nucleus	57.68	55.23
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	56.31	52.88
GSMUA_Achr7P10720_001	Banana	nucleus	52.9	51.84
GSMUA_Achr10P...	Banana	nucleus	49.49	50.52
GSMUA_Achr2P19950_001	Banana	nucleus	42.66	45.79
GSMUA_Achr6P32030_001	Banana	nucleus	35.84	36.59
GSMUA_Achr9P05260_001	Banana	nucleus	35.84	35.96
GSMUA_Achr4P16600_001	Banana	nucleus	29.35	34.82
GSMUA_Achr7P21980_001	Banana	nucleus	26.96	31.98
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	28.33	30.74
GSMUA_Achr8P01690_001	Banana	nucleus	27.99	29.39
GSMUA_Achr9P19330_001	Banana	mitochondrion	20.82	24.6
GSMUA_Achr4P06840_001	Banana	nucleus	21.16	24.41
GSMUA_Achr4P13800_001	Banana	nucleus	21.16	22.79
GSMUA_Achr1P23090_001	Banana	nucleus	20.14	20.27
GSMUA_Achr10P...	Banana	vacuole	20.14	10.0

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G21940_001	EnsemblPlants:GSMUA_Achr10P21940_001	EnsemblPlants:GSMUA_Achr10T21940_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0RKB9	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296A10A	SEG:seg

Description

Putative AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G21940_001]

Coordinates

chr10:-:27308723..27309781

Molecular Weight (calculated)

31613.1 Da

IEP (calculated)

6.310

GRAVY (calculated)

-0.479

Length

293 amino acids

Sequence
(BLAST)

001: MNLMDTTFLV PIKRTEHIVV TPKPFSQQPK RRPSDVPVAA PLPRTVRIFC DDYDATDSSG DESGCCHSRR RVRRYVQEVR FEARSARGGP HAVGEAGKSK
101: AAKGGGAGKK RKAGPVVATS GDGSVQRFRG VRRRPWGKYA AEIRDPWRRV RVWLGTYNTA EEAAKVYDSA AIKLRGPDAT TNFARPPADA ATKPKQPGTV
201: GDEKDVAAGS SVEPGGFLPL EKDEVLFDDL LGFGVFDDDD SAPIGFLAEE LSDAVLNGSG LDVDLGPTST WQGVDDFFDG IGDLFPIEPL PAI

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.