Factsheet for GSMUA_Achr6P32030_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P05260_001	Banana	nucleus	73.52	72.26
HORVU3Hr1G059250.1	Barley	nucleus	49.13	47.8
TraesCS3B01G266800.1	Wheat	nucleus	48.08	47.1
Os01t0657400-00	Rice	nucleus	47.39	46.58
TraesCS3D01G238600.1	Wheat	nucleus	47.39	46.42
TraesCS3A01G238300.1	Wheat	nucleus	47.04	45.76
Zm00001d044004_P001	Maize	nucleus	46.34	44.48
Zm00001d011499_P001	Maize	nucleus	46.69	44.22
EES03374	Sorghum	nucleus	47.74	41.9
GSMUA_Achr2P19950_001	Banana	nucleus	39.37	41.39
GSMUA_Achr10P...	Banana	nucleus	40.42	40.42
GSMUA_Achr6P14240_001	Banana	nucleus	38.68	39.64
GSMUA_Achr10P...	Banana	nucleus	40.77	38.24
GSMUA_Achr8P19850_001	Banana	nucleus	43.55	37.43
GSMUA_Achr9P28840_001	Banana	nucleus	38.33	37.29
GSMUA_Achr7P10720_001	Banana	nucleus	37.98	36.45
GSMUA_Achr10P...	Banana	nucleus	36.59	35.84
GSMUA_Achr7P14200_001	Banana	nucleus	35.54	35.54
GSMUA_Achr4P16600_001	Banana	nucleus	29.27	34.01
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	36.59	33.65
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	30.31	32.22
GSMUA_Achr7P21980_001	Banana	nucleus	26.83	31.17
TraesCS7A01G120100.1	Wheat	nucleus	34.49	31.13
TraesCS7B01G018400.1	Wheat	nucleus	34.15	30.43
TraesCS7D01G118000.1	Wheat	nucleus	34.15	30.25
Zm00001d036251_P001	Maize	nucleus	32.75	29.84
EER89242	Sorghum	nucleus, plastid	34.49	29.64
GSMUA_Achr8P01690_001	Banana	nucleus	28.57	29.39
Zm00001d045262_P001	Maize	nucleus	31.01	28.25
GSMUA_Achr4P06840_001	Banana	nucleus	23.0	25.98
GSMUA_Achr9P19330_001	Banana	mitochondrion	20.91	24.19
GSMUA_Achr4P13800_001	Banana	nucleus	21.6	22.79
GSMUA_Achr1P23090_001	Banana	nucleus	20.56	20.27
GSMUA_Achr10P...	Banana	vacuole	24.39	11.86

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G32030_001	EnsemblPlants:GSMUA_Achr6P32030_001	EnsemblPlants:GSMUA_Achr6T32030_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TBZ8	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF37	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294A85E	SEG:seg

Description

Putative AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G32030_001]

Coordinates

chr6:+:31590320..31591183

Molecular Weight (calculated)

31054.7 Da

IEP (calculated)

4.575

GRAVY (calculated)

-0.520

Length

287 amino acids

Sequence
(BLAST)

001: MKKARTLRIF WTDPEATDSS GDDEECGVSG RRVGRLVREI GLDPCPAVVD KPRRARKKAP AGGGKVASQT GSTKFRGVRR RPWGKYAAEI RDPWRGVRVW
101: LGTFDTAEEA AMVYDCAALQ LRGPGATTNF SSSSSSSTTP APPQVAEEAS DPTTVSAGYD SGDDSQSRTS PTSVLRGFSS YSAVQGPATE ETKKGADVFN
201: PAVFLPEMTV EEFSPFEDMP LFNDSSCFET WEPRIPEATT ARVGFSAAAD PSTTAWDSGF GSATWHEDDY FHEIGDLFPL EPLPAIF

Best Arabidopsis Sequence Match ( AT4G23750.1 )
(BLAST)

001: MEAEKKMVLP RIKFTEHKTN TTTIVSELTN THQTRILRIS VTDPDATDSS SDDEEEEHQR FVSKRRRVKK FVNEVYLDSG AVVTGSCGQM ESKKRQKRAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV

Arabidopsis Description

CRF2Ethylene-responsive transcription factor CRF2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.