CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045262_P001	Maize	nucleus	73.05	77.46
Zm00001d036251_P001	Maize	nucleus	64.07	67.94
TraesCS7A01G120100.1	Wheat	nucleus	38.62	40.57
TraesCS7D01G118000.1	Wheat	nucleus	38.32	39.51
TraesCS7B01G018400.1	Wheat	nucleus	37.72	39.13
GSMUA_Achr6P32030_001	Banana	nucleus	29.64	34.49
GSMUA_Achr9P05260_001	Banana	nucleus	29.34	33.56
OQU82736	Sorghum	nucleus	22.46	31.25
EES03374	Sorghum	nucleus	29.94	30.58
KXG31528	Sorghum	nucleus	34.43	29.34
EER90653	Sorghum	nucleus	18.56	25.83
KXG33839	Sorghum	nucleus	22.46	24.75
EER98690	Sorghum	nucleus	18.56	21.99
OQU89260	Sorghum	nucleus	15.87	18.4
KXG34718	Sorghum	nucleus	17.96	17.44

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5Z4H5	InterPro:DNA-bd_dom_sf
EnsemblPlants:EER89242	ProteinID:EER89242	ProteinID:EER89242.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380	EnsemblPlantsGene:SORBI_3010G047500	SUPFAM:SSF54171	UniParc:UPI0003C6512D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:3685201..3686578

Molecular Weight (calculated)

35047.9 Da

IEP (calculated)

4.777

GRAVY (calculated)

-0.441

Length

334 amino acids

Sequence
(BLAST)

001: MVEAAAVVHK AAAAVMRSSS QKKIKQEPAE TTTIRKLVRV FCEDRDATDS SGDEAAAGDG ASGARGVRKF VKEIVLEERR PCCDVTANPV PAGRIAGGGK
101: RKAPAGAGAE PRYRGVRRRP WGKYAAEIRD PHKGERVWLG TFDTAEEAAR KYDSEARRLR GPSATTNFPA APTTRPDRVP LPPSSPHAVP AVGELSSAEE
201: SSDESQLVVG SPVSVLRAMP GETTPLTTLK PTDAADSTAK KDAAPGGGAG LSPFSADALL PDQLGGEDVF SFTPFGGDPD FGGVPFDDSP TPPLIDYLAD
301: DPTLDLGSLP MWPGVDGCRF SDIGDDDLFS LPPL

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.