CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039324_P001	Maize	nucleus	73.98	81.92
Zm00001d008968_P001	Maize	nucleus	62.24	75.08
Os01t0224100-01	Rice	nucleus	63.01	65.0
TraesCS3B01G176200.1	Wheat	nucleus	57.4	64.1
TraesCS3A01G149000.1	Wheat	nucleus	57.4	64.1
TraesCS3D01G157100.1	Wheat	nucleus	56.38	63.51
HORVU3Hr1G030310.1	Barley	nucleus	56.63	62.89
GSMUA_Achr2P19950_001	Banana	nucleus	32.65	46.89
GSMUA_Achr10P...	Banana	nucleus	35.46	45.42
GSMUA_Achr6P14240_001	Banana	nucleus	32.14	45.0
GSMUA_Achr8P19850_001	Banana	nucleus	37.24	43.71
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	32.14	40.38
EES03374	Sorghum	nucleus	31.63	37.92
EER89242	Sorghum	nucleus, plastid	29.34	34.43
OQU82736	Sorghum	nucleus	20.41	33.33
KXG33839	Sorghum	nucleus	22.45	29.04
EER90653	Sorghum	nucleus	16.84	27.5
EER98690	Sorghum	nucleus	16.84	23.4
OQU89260	Sorghum	nucleus	13.78	18.75
KXG34718	Sorghum	nucleus	16.33	18.6

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A1B6Q0S9	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KXG31528	ProteinID:KXG31528	ProteinID:KXG31528.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380	EnsemblPlantsGene:SORBI_3003G012800	SUPFAM:SSF54171	UniParc:UPI00081ADC91
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:1141079..1142874

Molecular Weight (calculated)

41610.8 Da

IEP (calculated)

4.323

GRAVY (calculated)

-0.442

Length

392 amino acids

Sequence
(BLAST)

001: MWPMEEEMFV AVRRTEHVEV TSRAVEVAPA AAKGREAAAG SAVPGPRTVR VFCDDYDATD SSSDEAEEDA VARRRVKRYV QEIRLERAVK EEAPAGRAGA
101: SSAAAMAGAA GERTTTRLVL PGRKRKSDGA AAEPRFRGVR RRPWGKYAAE IRDPWRRVRV WLGTFDTAEE AAKVYDSAAI QLRGADATTN FEQVDDAPVP
201: VPDEVAERLP QPPATASAPA PAASKNASSS ATSYDSGEES HAAAASPTSV LRSFPPSAVA DDTCTKAAAK KPTTSPAPAI PAASAPETDE STGGGTSSVF
301: GCPFSSADDC FGGEFPPLYT DFDLLADFPE PSLDFLADIP EEPLSLAPSI PAGSPEEWPS DAEPASPGRW QQVDDFFQDI TDLFQIDPLP VV

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.