CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90653
KXG34718

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22985.1	EER90653	AT1G22985.1	21705390
AT1G22985.1	KXG34718	AT1G22985.1	21705390
AT1G22985.1	EER90653	AT1G71130.1	21705390
AT1G22985.1	KXG34718	AT1G71130.1	21705390
AT1G71130.1	EER90653	AT1G22985.1	21705390
AT1G71130.1	KXG34718	AT1G22985.1	21705390
AT1G71130.1	EER90653	AT1G71130.1	21705390
AT1G71130.1	KXG34718	AT1G71130.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034605_P001	Maize	nucleus	83.33	84.03
Os03t0815800-01	Rice	nucleus	57.08	56.85
TraesCS5D01G481700.1	Wheat	nucleus	53.75	40.57
HORVU5Hr1G111550.1	Barley	nucleus	53.33	38.1
TraesCS5B01G481300.1	Wheat	nucleus	55.0	37.61
TraesCS5A01G468800.1	Wheat	nucleus	56.25	37.29
CDY70837	Canola	nucleus	22.5	36.73
Bra012352.1-P	Field mustard	nucleus	22.08	36.05
CDY09516	Canola	nucleus	24.17	35.37
Bra003936.1-P	Field mustard	nucleus	24.17	35.15
CDX68325	Canola	nucleus	24.17	35.15
CDY49223	Canola	nucleus	24.17	35.15
AT1G71130.1	Thale cress	nucleus	23.33	34.78
CDY66105	Canola	nucleus	24.17	34.73
Bra007963.1-P	Field mustard	nucleus	24.17	34.73
CDY12500	Canola	nucleus	22.08	34.19
AT1G22985.1	Thale cress	nucleus	22.08	33.33
CDY41468	Canola	nucleus	21.25	32.28
CDX91694	Canola	nucleus	21.25	31.68
Bra016367.1-P	Field mustard	nucleus	20.83	31.65
KXG34718	Sorghum	nucleus	43.33	30.23
OQU82736	Sorghum	nucleus	27.08	27.08
KXG33839	Sorghum	nucleus	29.17	23.1
EES03374	Sorghum	nucleus	25.83	18.96
EER89242	Sorghum	nucleus, plastid	25.83	18.56
KXG31528	Sorghum	nucleus	27.5	16.84
EER98690	Sorghum	nucleus	18.33	15.6
OQU89260	Sorghum	nucleus	13.33	11.11

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:8057072	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5WV63
InterPro:DNA-bd_dom_sf	EnsemblPlants:EER90653	ProteinID:EER90653	ProteinID:EER90653.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF82	SMART:SM00380	EnsemblPlantsGene:SORBI_3001G039800	SUPFAM:SSF54171
unigene:Sbi.3576	UniParc:UPI0001A8200A	RefSeq:XP_002463655.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:2963339..2964486

Molecular Weight (calculated)

25871.7 Da

IEP (calculated)

10.884

GRAVY (calculated)

-0.573

Length

240 amino acids

Sequence
(BLAST)

001: MGTNPLLQEL AAVVVAAADS EPPRPRPRVV RILVHDADAT DSSSSEDEAR PPPRRRARGG NSSVGVRRHV MEPAGASSSV RFRGVRRRPW GRWAAEIRDP
101: HSRRRLWLGT FNTAEEAANA YDAANIRFRG ASAPTNFPAA SYSPPPEPAK PIISLTPEPG KVITLPPVPV KQTFPLQVKE EGGSRDGQVK GGSSEVKALP
201: PKRVWEMIPS KRQKYPGCAD GSGLRAIHAA SLYVEEVGGA

Best Arabidopsis Sequence Match ( AT1G03800.1 )
(BLAST)

001: MTTEKENVTT AVAVKDGGEK SKEVSDKGVK KRKNVTKALA VNDGGEKSKE VRYRGVRRRP WGRYAAEIRD PVKKKRVWLG SFNTGEEAAR AYDSAAIRFR
101: GSKATTNFPL IGYYGISSAT PVNNNLSETV SDGNANLPLV GDDGNALASP VNNTLSETAR DGTLPSDCHD MLSPGVAEAV AGFFLDLPEV IALKEELDRV
201: CPDQFESIDM GLTIGPQTAV EEPETSSAVD CKLRMEPDLD LNASP

Arabidopsis Description

ERF10At1g03800 [Source:UniProtKB/TrEMBL;Acc:Q08A59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.