Factsheet for Bra003936.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003068.1-P
Bra003462.1-P
Bra003936.1-P
Bra004548.1-P
Bra007963.1-P
Bra010389.1-P
Bra012352.1-P
Bra013730.1-P
Bra016367.1-P
Bra019270.1-P
Bra022643.1-P
Bra025394.1-P
Bra026295.1-P
Bra029079.1-P
Bra036215.1-P
Bra040839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71130.1	Bra012352.1-P	AT1G22985.1	21705390
AT1G71130.1	Bra016367.1-P	AT1G22985.1	21705390
AT1G71130.1	Bra003936.1-P	AT1G71130.1	21705390
AT1G71130.1	Bra007963.1-P	AT1G71130.1	21705390
AT1G71130.1	Bra004548.1-P	AT2G46310.1	21705390
AT1G71130.1	Bra025394.1-P	AT3G29350.1	21705390
AT1G71130.1	Bra036215.1-P	AT3G29350.1	21705390
AT1G71130.1	Bra003462.1-P	AT3G61630.1	21705390
AT1G71130.1	Bra013730.1-P	AT4G23750.1	21705390
AT1G71130.1	Bra019270.1-P	AT4G23750.1	21705390
AT1G71130.1	Bra010389.1-P	AT4G27950.1	21705390
AT1G71130.1	Bra026295.1-P	AT4G27950.1	21705390
AT1G71130.1	Bra040839.1-P	AT4G27950.1	21705390
AT1G71130.1	Bra003068.1-P	AT5G53290.1	21705390
AT1G71130.1	Bra022643.1-P	AT5G53290.1	21705390
AT1G71130.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68325	Canola	nucleus	98.18	98.18
Bra007963.1-P	Field mustard	nucleus	82.42	81.44
AT1G71130.1	Thale cress	nucleus	76.97	78.88
Bra012352.1-P	Field mustard	nucleus	55.15	61.9
Bra016367.1-P	Field mustard	nucleus	56.97	59.49
Zm00001d034605_P001	Maize	nucleus	35.76	24.79
Bra019270.1-P	Field mustard	nucleus	46.06	24.52
EER90653	Sorghum	nucleus	35.15	24.17
Os03t0815800-01	Rice	nucleus	35.15	24.07
Bra013730.1-P	Field mustard	nucleus	44.85	23.49
Bra004548.1-P	Field mustard	nucleus	38.18	23.42
Bra003462.1-P	Field mustard	nucleus	39.39	22.97
Bra029079.1-P	Field mustard	nucleus	44.85	21.57
Bra040839.1-P	Field mustard	nucleus	41.82	21.23
Bra010389.1-P	Field mustard	nucleus	41.82	21.04
Bra003068.1-P	Field mustard	nucleus	45.45	20.6
Bra000736.1-P	Field mustard	nucleus	33.94	20.51
Bra026295.1-P	Field mustard	nucleus	41.82	20.47
Bra022643.1-P	Field mustard	nucleus	43.03	20.17
Bra036360.1-P	Field mustard	nucleus	29.7	17.44
Zm00001d019216_P001	Maize	nucleus	27.27	17.24
TraesCS5D01G481700.1	Wheat	nucleus	30.91	16.04
Zm00001d005203_P001	Maize	nucleus	27.88	15.81
HORVU5Hr1G111550.1	Barley	nucleus	31.52	15.48
Bra004033.1-P	Field mustard	nucleus	29.7	15.46
Bra033923.1-P	Field mustard	nucleus	29.09	15.19
Bra004318.1-P	Field mustard	nucleus	27.88	15.13
TraesCS5B01G481300.1	Wheat	nucleus	31.52	14.81
Bra025170.1-P	Field mustard	nucleus	27.88	14.47
TraesCS5A01G468800.1	Wheat	nucleus	31.52	14.36
Bra024743.1-P	Field mustard	plastid	28.48	14.07
KXG34718	Sorghum	nucleus	27.88	13.37

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra003936
EnsemblPlants:Bra003936.1	EnsemblPlants:Bra003936.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CIA3	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002541890	SEG:seg	:	:	:	:

Description

AT1G71130 (E=4e-046) | AP2 domain-containing transcription factor, putative

Coordinates

chrA07:-:15835613..15836110

Molecular Weight (calculated)

18474.0 Da

IEP (calculated)

10.396

GRAVY (calculated)

-0.663

Length

165 amino acids

Sequence
(BLAST)

001: MKRIVRISFT DAEATDSSSS EEEADQLSEP SLARRRGKRL VKEIVIDSSD SDNKLDVCKT RFKIRIPPEF LKAATTEKKN KKKFRGVRQR PWGKWAAEIR
101: CGRALKGRRD RLWLGTFDTA EEAALAYDNA AVQLIGPHAP TNFSFPAENH EVKMVAGESA VARGA

Best Arabidopsis Sequence Match ( AT1G71130.1 )
(BLAST)

001: MKRIIRISFT DAEATDSSSD EDTEERGGAS QTRRRGKRLV KEIVIDPSDS ADKLDVCKTR FKIRIPAEFL KTAKTEKKYR GVRQRPWGKW VAEIRCGRGA
101: CKGRRDRLWL GTFNTAEEAA LAYDNASIKL IGPHAPTNFG LPAENQEDKT VIGASEVARG A

Arabidopsis Description

ERF070Ethylene-responsive transcription factor ERF070 [Source:UniProtKB/Swiss-Prot;Acc:Q9C995]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.