Factsheet for Bra000736.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000736.1-P
Bra003068.1-P
Bra003462.1-P
Bra003936.1-P
Bra004548.1-P
Bra007963.1-P
Bra010389.1-P
Bra012352.1-P
Bra013730.1-P
Bra016367.1-P
Bra019270.1-P
Bra022643.1-P
Bra023876.1-P
Bra025394.1-P
Bra026295.1-P
Bra029079.1-P
Bra032035.1-P
Bra036215.1-P
Bra040839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11140.1	Bra012352.1-P	AT1G22985.1	21705390
AT4G11140.1	Bra016367.1-P	AT1G22985.1	21705390
AT4G11140.1	Bra003936.1-P	AT1G71130.1	21705390
AT4G11140.1	Bra007963.1-P	AT1G71130.1	21705390
AT4G11140.1	Bra032035.1-P	AT2G25180.1	21705390
AT4G11140.1	Bra004548.1-P	AT2G46310.1	21705390
AT4G11140.1	Bra023876.1-P	AT3G21510.1	21705390
AT4G11140.1	Bra025394.1-P	AT3G29350.1	21705390
AT4G11140.1	Bra036215.1-P	AT3G29350.1	21705390
AT4G11140.1	Bra003462.1-P	AT3G61630.1	21705390
AT4G11140.1	Bra000736.1-P	AT4G11140.1	21705390
AT4G11140.1	Bra013730.1-P	AT4G23750.1	21705390
AT4G11140.1	Bra019270.1-P	AT4G23750.1	21705390
AT4G11140.1	Bra010389.1-P	AT4G27950.1	21705390
AT4G11140.1	Bra026295.1-P	AT4G27950.1	21705390
AT4G11140.1	Bra040839.1-P	AT4G27950.1	21705390
AT4G11140.1	Bra003068.1-P	AT5G53290.1	21705390
AT4G11140.1	Bra022643.1-P	AT5G53290.1	21705390
AT4G11140.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90774	Canola	nucleus	99.27	97.83
CDY05133	Canola	nucleus	96.7	95.31
AT4G11140.1	Thale cress	nucleus	67.03	63.76
Bra019270.1-P	Field mustard	nucleus	54.21	47.74
Bra013730.1-P	Field mustard	nucleus	51.65	44.76
Bra007963.1-P	Field mustard	nucleus	20.88	34.13
Bra003936.1-P	Field mustard	nucleus	20.51	33.94
Bra016367.1-P	Field mustard	nucleus	19.41	33.54
Bra012352.1-P	Field mustard	nucleus	17.58	32.65
KRH41287	Soybean	nucleus	34.07	31.74
KRG92510	Soybean	nucleus	22.34	31.61
KRH27859	Soybean	nucleus	32.6	30.8
KRH77624	Soybean	nucleus	32.97	30.2
PGSC0003DMT400032058	Potato	nucleus	36.63	29.59
Solyc08g081960.1.1	Tomato	nucleus	35.9	28.91
Bra003068.1-P	Field mustard	nucleus	38.1	28.57
Bra029079.1-P	Field mustard	nucleus	35.16	27.99
KRH60010	Soybean	nucleus	33.33	27.25
Bra022643.1-P	Field mustard	nucleus	34.8	26.99
Bra003462.1-P	Field mustard	nucleus	26.74	25.8
Bra026295.1-P	Field mustard	nucleus	31.5	25.52
Bra004548.1-P	Field mustard	nucleus	24.54	24.91
Bra040839.1-P	Field mustard	nucleus	28.21	23.69
Bra010389.1-P	Field mustard	nucleus	27.84	23.17
Bra004033.1-P	Field mustard	nucleus	22.71	19.56
Bra036360.1-P	Field mustard	nucleus	19.41	18.86
Bra033923.1-P	Field mustard	nucleus	21.25	18.35
Bra004318.1-P	Field mustard	nucleus	19.41	17.43
Bra025170.1-P	Field mustard	nucleus	18.68	16.04
Bra024743.1-P	Field mustard	plastid	18.68	15.27

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra000736	EnsemblPlants:Bra000736.1
EnsemblPlants:Bra000736.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009987	GO:GO:0042991	GO:GO:0048366
GO:GO:0048825	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4C958	PFAM:PF00847	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF14	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000253FC7B	SEG:seg

Description

AT4G11140 (E=2e-040) CRF1 | CRF1 (CYTOKININ RESPONSE FACTOR 1); DNA binding / transcription factor

Coordinates

chrA03:-:12751319..12752220

Molecular Weight (calculated)

29880.7 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.537

Length

273 amino acids

Sequence
(BLAST)

001: MEAEKNVVKL SEHNIMTATT VTQPRILRIS VSDPYATDSS SDEEEDFADI SRKRRRVKKC INEVVLESTV SDKDRPKKKK RPNTKTTAST AVTAPARKYR
101: GVRQRPWGKW AAEIRDPSRR LRGPNALTNF SPPATENGEE ASKEMDGVSD ITTSGGVECL GSPVSVLQTP FSGESTAATT VKEEFSGVSK TAVEVKEEPS
201: LTVSDTFTGF SSPLFLHDDV FGFPTTMPDC FGDEFFADMS FGFGSGSGFS SWHVEDHFQD IGDLFGSDPL LTV

Best Arabidopsis Sequence Match ( AT4G11140.1 )
(BLAST)

001: METEKKVSLP RILRISVTDP YATDSSSDEE EEVDFDALST KRRRVKKYVK EVVLDSVVSD KEKPMKKKRK KRVVTVPVVV TTATRKFRGV RQRPWGKWAA
101: EIRDPSRRVR VWLGTFDTAE EAAIVYDNAA IQLRGPNAEL NFPPPPVTEN VEEASTEVKG VSDFIIGGGE CLRSPVSVLE SPFSGESTAV KEEFVGVSTA
201: EIVVKKEPSF NGSDFSAPLF SDDDVFGFST SMSESFGGDL FGDNLFADMS FGSGFGFGSG SGFSSWHVED HFQDIGDLFG SDPVLTV

Arabidopsis Description

CRF1Ethylene-responsive transcription factor CRF1 [Source:UniProtKB/Swiss-Prot;Acc:O82503]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.