Factsheet for Bra010389.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000736.1-P
Bra003068.1-P
Bra003462.1-P
Bra004548.1-P
Bra010389.1-P
Bra012352.1-P
Bra013730.1-P
Bra016367.1-P
Bra019270.1-P
Bra022643.1-P
Bra023876.1-P
Bra025394.1-P
Bra026295.1-P
Bra029079.1-P
Bra036215.1-P
Bra040839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27950.1	Bra012352.1-P	AT1G22985.1	21705390
AT4G27950.1	Bra016367.1-P	AT1G22985.1	21705390
AT4G27950.1	Bra004548.1-P	AT2G46310.1	21705390
AT4G27950.1	Bra023876.1-P	AT3G21510.1	21705390
AT4G27950.1	Bra025394.1-P	AT3G29350.1	21705390
AT4G27950.1	Bra036215.1-P	AT3G29350.1	21705390
AT4G27950.1	Bra003462.1-P	AT3G61630.1	21705390
AT4G27950.1	Bra000736.1-P	AT4G11140.1	21705390
AT4G27950.1	Bra013730.1-P	AT4G23750.1	21705390
AT4G27950.1	Bra019270.1-P	AT4G23750.1	21705390
AT4G27950.1	Bra010389.1-P	AT4G27950.1	21705390
AT4G27950.1	Bra026295.1-P	AT4G27950.1	21705390
AT4G27950.1	Bra040839.1-P	AT4G27950.1	21705390
AT4G27950.1	Bra003068.1-P	AT5G53290.1	21705390
AT4G27950.1	Bra022643.1-P	AT5G53290.1	21705390
AT4G27950.1	Bra029079.1-P	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14263	Canola	nucleus	98.78	98.78
Bra040839.1-P	Field mustard	nucleus	72.56	73.23
Bra026295.1-P	Field mustard	nucleus	72.56	70.62
AT4G27950.1	Thale cress	nucleus	71.34	69.85
Bra029079.1-P	Field mustard	nucleus	48.48	46.36
Bra022643.1-P	Field mustard	nucleus	48.78	45.45
Bra003068.1-P	Field mustard	nucleus	50.3	45.33
Bra012352.1-P	Field mustard	nucleus	18.9	42.18
Bra003936.1-P	Field mustard	nucleus	21.04	41.82
Bra007963.1-P	Field mustard	nucleus	21.04	41.32
Bra016367.1-P	Field mustard	nucleus	19.21	39.87
Bra003462.1-P	Field mustard	nucleus	29.27	33.92
Bra004548.1-P	Field mustard	nucleus	26.83	32.71
Bra019270.1-P	Field mustard	nucleus	29.57	31.29
Bra013730.1-P	Field mustard	nucleus	28.96	30.16
Bra000736.1-P	Field mustard	nucleus	23.17	27.84
Bra033923.1-P	Field mustard	nucleus	20.43	21.2
Bra004033.1-P	Field mustard	nucleus	19.51	20.19
Bra036360.1-P	Field mustard	nucleus	17.07	19.93
Bra004318.1-P	Field mustard	nucleus	17.99	19.41
Bra025170.1-P	Field mustard	nucleus	17.68	18.24
Bra024743.1-P	Field mustard	plastid	18.29	17.96

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra010389	EnsemblPlants:Bra010389.1
EnsemblPlants:Bra010389.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4D1N9	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF40	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002545686	SEG:seg

Description

AT4G27950 (E=4e-114) CRF4 | CRF4 (CYTOKININ RESPONSE FACTOR 4); DNA binding / transcription factor

Coordinates

chrA08:+:14239644..14240630

Molecular Weight (calculated)

37356.0 Da

IEP (calculated)

4.549

GRAVY (calculated)

-0.557

Length

328 amino acids

Sequence
(BLAST)

001: MIMDEYMELR PVKYTEHKTV IKKYTKKLPV ENKKKISTGR DSVRLVRVCV MDRDATDSSS DDEEFLFPRR RVKRLINEIR VQPSSSSGEV SAGKTLTVVD
101: PTLQKVPVSG VEQNPRKFRG VRRRPWGKYA AEIRDPEQRR RIWLGTFSTA EEAAMVYDNA AIRLRGPDAL TNFTVPTELE PEPEPVRNIS VSLTSESMDD
201: SHHLLSPTSV LNYQISELTD EPIKPVKQEF PEREPISWSV GEDVSSNTDD SFPLDIPFLD KYFNESLPDI SIFDQSMSTI ESSDKDFFNG LMFFDDTIGG
301: ENYYPDIKEI GSVLNDLDES LISDLLAV

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.