Factsheet for AT4G27950.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29870	Canola	nucleus	70.45	72.62
Bra040839.1-P	Field mustard	nucleus	70.45	72.62
CDX92852	Canola	nucleus	69.55	71.91
CDY14263	Canola	nucleus	69.85	71.34
CDX97406	Canola	nucleus	69.85	71.34
Bra010389.1-P	Field mustard	nucleus	69.85	71.34
CDY71485	Canola	nucleus	69.85	69.44
Bra026295.1-P	Field mustard	nucleus	69.55	69.14
CDY71170	Canola	nucleus	69.25	68.84
AT5G53290.1	Thale cress	nucleus	52.24	49.44
AT1G71130.1	Thale cress	nucleus	22.09	45.96
AT1G22985.1	Thale cress	nucleus	21.79	45.91
AT3G61630.1	Thale cress	nucleus	30.75	32.7
AT4G11140.1	Thale cress	nucleus	27.46	32.06
AT4G23750.1	Thale cress	nucleus	32.54	31.78
AT2G46310.1	Thale cress	nucleus	27.76	31.63
AT1G68550.2	Thale cress	nucleus	22.09	22.84
AT1G25470.1	Thale cress	nucleus	19.1	22.3
AT3G25890.2	Thale cress	nucleus	18.51	18.67

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:828908	ProteinID:AEE85412.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ArrayExpress:AT4G27950	EnsemblPlantsGene:AT4G27950	RefSeq:AT4G27950	TAIR:AT4G27950	RefSeq:AT4G27950-TAIR-G	EnsemblPlants:AT4G27950.1
TAIR:AT4G27950.1	EMBL:AY560872	EMBL:BT033088	ProteinID:CAB36764.1	ProteinID:CAB79597.1	Symbol:CRF4
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009736	GO:GO:0009873
GO:GO:0009987	GO:GO:0042991	GO:GO:0048366	InterPro:IPR001471	InterPro:IPR036955	RefSeq:NP_194524.2
PFAM:PF00847	PO:PO:0000293	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43
UniProt:Q9SUE3	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000034F124	SEG:seg	:

Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]

Coordinates

chr4:-:13909542..13910995

Molecular Weight (calculated)

38449.6 Da

IEP (calculated)

4.358

GRAVY (calculated)

-0.781

Length

335 amino acids

Sequence
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.