Factsheet for AT5G53290.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022643.1-P	Field mustard	nucleus	75.42	75.85
Bra003068.1-P	Field mustard	nucleus	77.97	75.82
CDY49175	Canola	nucleus	75.14	75.78
CDY61587	Canola	nucleus	76.55	74.86
CDX96208	Canola	nucleus	73.73	74.79
CDY54340	Canola	nucleus	69.21	72.7
CDY47066	Canola	nucleus	69.77	72.22
Bra029079.1-P	Field mustard	nucleus	69.77	72.01
AT4G27950.1	Thale cress	nucleus	49.44	52.24
AT1G22985.1	Thale cress	nucleus	22.32	49.69
AT1G71130.1	Thale cress	nucleus	20.9	45.96
AT4G23750.1	Thale cress	nucleus	32.77	33.82
AT4G11140.1	Thale cress	nucleus	27.4	33.8
AT2G46310.1	Thale cress	nucleus	27.97	33.67
AT3G61630.1	Thale cress	nucleus	27.68	31.11
AT1G25470.1	Thale cress	nucleus	19.49	24.04
AT1G68550.2	Thale cress	nucleus	20.34	22.22
AT3G25890.2	Thale cress	nucleus	19.49	20.78

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:835410	ProteinID:AED96333.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ArrayExpress:AT5G53290	EnsemblPlantsGene:AT5G53290	RefSeq:AT5G53290	TAIR:AT5G53290	RefSeq:AT5G53290-TAIR-G	EnsemblPlants:AT5G53290.1
TAIR:AT5G53290.1	EMBL:AY560878	Unigene:At.49792	ProteinID:BAB09791.1	EMBL:BT020244	EMBL:BT021136
Symbol:CRF3	InterPro:DNA-bd_dom_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009736	GO:GO:0009790	GO:GO:0009791	GO:GO:0009873	GO:GO:0009987	GO:GO:0042991
GO:GO:0048366	GO:GO:0048825	InterPro:IPR001471	InterPro:IPR036955	RefSeq:NP_200141.1	PFAM:PF00847
PO:PO:0000037	PO:PO:0000293	PO:PO:0009005	PO:PO:0009025	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	UniProt:Q9FK12	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00000AB44C
SEG:seg	:	:	:	:	:

Description

CRF3Ethylene-responsive transcription factor CRF3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK12]

Coordinates

chr5:-:21617714..21619281

Molecular Weight (calculated)

40102.2 Da

IEP (calculated)

4.292

GRAVY (calculated)

-0.819

Length

354 amino acids

Sequence
(BLAST)

001: MDEYIDFRPL KYTEHKTSMT KYTKKSSEKL SGGKSLKKVS ICYTDPDATD SSSDEDEEDF LFPRRRVKRF VNEITVEPSC NNVVTGVSMK DRKRLSSSSD
101: ETQSPASSRQ RPNNKVSVSG QIKKFRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFETAEEA AVVYDNAAIR LRGPDALTNF SIPPQEEEEE EEPEPVIEEK
201: PVIMTTPTPT TSSSESTEED LQHLSSPTSV LNHRSEEIQQ VQQPFKSAKP EPGVSNAPWW HTGFNTGLGE SDDSFPLDTP FLDNYFNESP PEMSIFDQPM
301: DQIFCENDDI FNDMLFLGGE TMNIEDELTS SSIKDMGSTF SDFDDSLISD LLVA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.