CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71724
CDX80006
CDX90774
CDX91694
CDX92852
CDX95687
CDX96208
CDX97406
CDY05133
CDY11369
CDY12500
CDY14263
CDY29870
CDY41468
CDY42030
CDY47066
CDY49175
CDY52005
CDY53906
CDY54340
CDY61587
CDY70837
CDY71170
CDY71485

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53290.1	CDX91694	AT1G22985.1	21705390
AT5G53290.1	CDY12500	AT1G22985.1	21705390
AT5G53290.1	CDY41468	AT1G22985.1	21705390
AT5G53290.1	CDY70837	AT1G22985.1	21705390
AT5G53290.1	CDX80006	AT2G46310.1	21705390
AT5G53290.1	CDX95687	AT2G46310.1	21705390
AT5G53290.1	CDY42030	AT2G46310.1	21705390
AT5G53290.1	CDX71724	AT3G61630.1	21705390
AT5G53290.1	CDY11369	AT3G61630.1	21705390
AT5G53290.1	CDY52005	AT3G61630.1	21705390
AT5G53290.1	CDY53906	AT3G61630.1	21705390
AT5G53290.1	CDX90774	AT4G11140.1	21705390
AT5G53290.1	CDY05133	AT4G11140.1	21705390
AT5G53290.1	CDX92852	AT4G27950.1	21705390
AT5G53290.1	CDX97406	AT4G27950.1	21705390
AT5G53290.1	CDY14263	AT4G27950.1	21705390
AT5G53290.1	CDY29870	AT4G27950.1	21705390
AT5G53290.1	CDY71170	AT4G27950.1	21705390
AT5G53290.1	CDY71485	AT4G27950.1	21705390
AT5G53290.1	CDX96208	AT5G53290.1	21705390
AT5G53290.1	CDY47066	AT5G53290.1	21705390
AT5G53290.1	CDY49175	AT5G53290.1	21705390
AT5G53290.1	CDY54340	AT5G53290.1	21705390
AT5G53290.1	CDY61587	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003068.1-P	Field mustard	nucleus	94.75	94.23
CDY49175	Canola	nucleus	82.04	84.62
CDX96208	Canola	nucleus	80.66	83.67
CDY47066	Canola	nucleus	76.24	80.7
CDY54340	Canola	nucleus	74.86	80.42
AT5G53290.1	Thale cress	nucleus	74.86	76.55
CDY14263	Canola	nucleus	45.3	50.0
CDX97406	Canola	nucleus	44.75	49.39
CDX92852	Canola	nucleus	43.65	48.77
CDY71170	Canola	nucleus	45.3	48.66
CDY29870	Canola	nucleus	43.65	48.62
CDY71485	Canola	nucleus	45.03	48.37
CDY70837	Canola	nucleus	19.61	48.3
CDY12500	Canola	nucleus	20.17	47.1
CDY41468	Canola	nucleus	20.44	46.84
CDY66105	Canola	nucleus	21.27	46.11
CDX91694	Canola	nucleus	20.44	45.96
CDY09516	Canola	nucleus	20.44	45.12
CDX68325	Canola	nucleus	20.17	44.24
CDY49223	Canola	nucleus	20.17	44.24
CDY10965	Canola	nucleus	32.87	40.2
CDX94215	Canola	nucleus	33.43	38.53
CDX90774	Canola	nucleus	27.9	36.46
CDY47623	Canola	nucleus	31.49	36.19
CDY05133	Canola	nucleus	27.35	35.74
CDY11369	Canola	nucleus	27.9	35.69
CDY03521	Canola	nucleus	31.49	35.4
CDY52005	Canola	nucleus	27.9	35.19
CDY53906	Canola	nucleus	27.35	34.86
CDX71724	Canola	nucleus	27.62	34.72
CDX80006	Canola	nucleus	25.41	34.2
CDX95687	Canola	nucleus	22.93	32.68
CDY42030	Canola	nucleus	24.59	32.6
CDX84990	Canola	nucleus	16.3	23.79
CDY38591	Canola	nucleus	18.23	21.93
CDY65135	Canola	nucleus	18.78	21.73
CDY44887	Canola	nucleus	18.78	21.52
CDY13596	Canola	nucleus	18.78	21.45
CDY04234	Canola	nucleus	18.78	21.45
CDX96010	Canola	nucleus	17.96	21.38
CDY07380	Canola	nucleus	18.51	21.27
CDX83568	Canola	nucleus	18.23	21.09
CDY42104	Canola	nucleus	10.22	20.67
CDY40978	Canola	nucleus	13.81	19.76
CDX99741	Canola	nucleus	16.57	19.05

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	GO:A0A078J899	UniProt:A0A078J899	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDY61587	ProteinID:CDY61587	ProteinID:CDY61587.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00034033001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF40	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0004EEF53C	SEG:seg	:	:	:	:

Description

BnaCnng38100DBnaCnng38100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J899]

Coordinates

chrLK034014:-:11666..12754

Molecular Weight (calculated)

41180.5 Da

IEP (calculated)

4.441

GRAVY (calculated)

-0.799

Length

362 amino acids

Sequence
(BLAST)

001: MMEEYIDFRP LKYTEHKTSV TKYTKKSPAK NPSGETRPDS VRIVRVSVTD PYATDSSSDD EEDFLFPRRR VKRFVNEIKV EPACNNNNIN ITGVSMKERR
101: RLSDETQYPT TSRHRRPLKV SIPSAQNGRK FRGVRQRPWG KWAAEIRDPE QRRRIWLGTF ETAEEAAVVY DNAAIRLRGP DALTNFSIPP QSQEEEEEPE
201: QPVIDKPENN IATTTTTTTT TSSSESTEDF QHLSSPTSVL NIRPSEDIQQ PFKSAKPEPE TSDAPWWHSG FSSGSGESDD SFPLDTSFLD SYFNECPPEI
301: SIFDQPMGQV FFENDDTFND MFLGGEIMMM NIGEEFTSSS IKDIGSMFSD FDDSLISDLL LV

Best Arabidopsis Sequence Match ( AT5G53290.1 )
(BLAST)

001: MDEYIDFRPL KYTEHKTSMT KYTKKSSEKL SGGKSLKKVS ICYTDPDATD SSSDEDEEDF LFPRRRVKRF VNEITVEPSC NNVVTGVSMK DRKRLSSSSD
101: ETQSPASSRQ RPNNKVSVSG QIKKFRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFETAEEA AVVYDNAAIR LRGPDALTNF SIPPQEEEEE EEPEPVIEEK
201: PVIMTTPTPT TSSSESTEED LQHLSSPTSV LNHRSEEIQQ VQQPFKSAKP EPGVSNAPWW HTGFNTGLGE SDDSFPLDTP FLDNYFNESP PEMSIFDQPM
301: DQIFCENDDI FNDMLFLGGE TMNIEDELTS SSIKDMGSTF SDFDDSLISD LLVA

Arabidopsis Description

CRF3Ethylene-responsive transcription factor CRF3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.