Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003462.1-P | Field mustard | nucleus | 94.08 | 95.41 |
| CDY53906 | Canola | nucleus | 92.68 | 93.66 |
| CDY11369 | Canola | nucleus | 66.55 | 67.49 |
| CDX71724 | Canola | nucleus | 67.6 | 67.36 |
| AT3G61630.1 | Thale cress | nucleus | 63.41 | 57.78 |
| CDX80006 | Canola | nucleus | 46.69 | 49.81 |
| CDY42030 | Canola | nucleus | 45.3 | 47.62 |
| CDX95687 | Canola | nucleus | 41.81 | 47.24 |
| CDY70837 | Canola | nucleus | 21.6 | 42.18 |
| CDX68325 | Canola | nucleus | 22.65 | 39.39 |
| CDY49223 | Canola | nucleus | 22.65 | 39.39 |
| CDY12500 | Canola | nucleus | 21.25 | 39.35 |
| CDY41468 | Canola | nucleus | 21.6 | 39.24 |
| CDY09516 | Canola | nucleus | 22.3 | 39.02 |
| CDY66105 | Canola | nucleus | 22.65 | 38.92 |
| CDX91694 | Canola | nucleus | 21.25 | 37.89 |
| VIT_15s0046g01390.t01 | Wine grape | nucleus | 36.24 | 33.12 |
| CDY10965 | Canola | nucleus | 31.71 | 30.74 |
| CDY71170 | Canola | nucleus | 35.19 | 29.97 |
| CDX97406 | Canola | nucleus | 34.15 | 29.88 |
| CDY71485 | Canola | nucleus | 34.84 | 29.67 |
| CDX92852 | Canola | nucleus | 33.45 | 29.63 |
| CDY14263 | Canola | nucleus | 33.8 | 29.57 |
| CDY29870 | Canola | nucleus | 33.45 | 29.54 |
| CDY47623 | Canola | nucleus | 31.71 | 28.89 |
| CDY49175 | Canola | nucleus | 34.84 | 28.49 |
| CDY47066 | Canola | nucleus | 33.8 | 28.36 |
| CDX94215 | Canola | nucleus | 31.01 | 28.34 |
| CDY03521 | Canola | nucleus | 31.71 | 28.26 |
| CDX96208 | Canola | nucleus | 34.15 | 28.08 |
| CDY61587 | Canola | nucleus | 35.19 | 27.9 |
| CDY54340 | Canola | nucleus | 32.75 | 27.89 |
| CDX90774 | Canola | nucleus | 25.78 | 26.71 |
| CDY05133 | Canola | nucleus | 25.09 | 25.99 |
| CDX84990 | Canola | nucleus | 20.21 | 23.39 |
| CDY65135 | Canola | nucleus | 24.04 | 22.04 |
| CDY44887 | Canola | nucleus | 24.04 | 21.84 |
| CDY04234 | Canola | nucleus | 23.34 | 21.14 |
| CDY07380 | Canola | nucleus | 23.0 | 20.95 |
| CDY42104 | Canola | nucleus | 12.89 | 20.67 |
| CDY38591 | Canola | nucleus | 21.25 | 20.27 |
| CDX96010 | Canola | nucleus | 21.25 | 20.07 |
| CDY13596 | Canola | nucleus | 19.86 | 17.98 |
| CDX83568 | Canola | nucleus | 19.51 | 17.89 |
| CDY40978 | Canola | nucleus | 15.68 | 17.79 |
| CDX99741 | Canola | nucleus | 17.77 | 16.19 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078ILP5 | UniProt:A0A078ILP5 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY52005 | ProteinID:CDY52005 | ProteinID:CDY52005.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00004704001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF43 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EE4DAE | SEG:seg | : | : | : | : |
Description
BnaC06g42850DBnaC06g42850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILP5]
Coordinates
chrLK033047:-:18666..19529
Molecular Weight (calculated)
32020.2 Da
IEP (calculated)
5.066
GRAVY (calculated)
-0.678
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MERGSRRVKF TEHCTVKPVP AKPSNGSPRV VRISFTDPFA TDSSSSDEEE NDKACPTPRV KRYVEEIRFG ETKPPRKARC KAEKKGCGGE RKAKADVSAN
101: PIKYRGVRQR RWGSFAAEIR DSASRTRIWL GTFATAEEAA VAYDRAAIRL KGHSALTNFL TPPSPGETPV IDLKTVSGCD SGSQSLCSPT SVLRFNVKEE
201: TELETAEVKP DVAGLFPDPY SLPELSLAGE YFWDSEFPPA PLFVDEIEIH KPVPNRREDD EPEEFSFHLS GDFDATPWDV DNFFELD
101: PIKYRGVRQR RWGSFAAEIR DSASRTRIWL GTFATAEEAA VAYDRAAIRL KGHSALTNFL TPPSPGETPV IDLKTVSGCD SGSQSLCSPT SVLRFNVKEE
201: TELETAEVKP DVAGLFPDPY SLPELSLAGE YFWDSEFPPA PLFVDEIEIH KPVPNRREDD EPEEFSFHLS GDFDATPWDV DNFFELD
001: MERRTRRVKF TENRTVTNVA ATPSNGSPRL VRITVTDPFA TDSSSDDDDN NNVTVVPRVK RYVKEIRFCQ GESSSSTAAR KGKHKEEESV VVEDDVSTSV
101: KPKKYRGVRQ RPWGKFAAEI RDPSSRTRIW LGTFVTAEEA AIAYDRAAIH LKGPKALTNF LTPPTPTPVI DLQTVSACDY GRDSRQSLHS PTSVLRFNVN
201: EETEHEIEAI ELSPERKSTV IKEEEESSAG LVFPDPYLLP DLSLAGECFW DTEIAPDLLF LDEETKIQST LLPNTEVSKQ GENETEDFEF GLIDDFESSP
301: WDVDHFFDHH HHSFD
101: KPKKYRGVRQ RPWGKFAAEI RDPSSRTRIW LGTFVTAEEA AIAYDRAAIH LKGPKALTNF LTPPTPTPVI DLQTVSACDY GRDSRQSLHS PTSVLRFNVN
201: EETEHEIEAI ELSPERKSTV IKEEEESSAG LVFPDPYLLP DLSLAGECFW DTEIAPDLLF LDEETKIQST LLPNTEVSKQ GENETEDFEF GLIDDFESSP
301: WDVDHFFDHH HHSFD
Arabidopsis Description
CRF6CRF6 [Source:UniProtKB/TrEMBL;Acc:A0A178VFH2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.