Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040839.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX92852 | Canola | nucleus | 94.77 | 95.06 |
| CDX97406 | Canola | nucleus | 74.46 | 73.78 |
| CDY14263 | Canola | nucleus | 73.85 | 73.17 |
| CDY71485 | Canola | nucleus | 75.08 | 72.4 |
| CDY71170 | Canola | nucleus | 75.08 | 72.4 |
| AT4G27950.1 | Thale cress | nucleus | 72.62 | 70.45 |
| CDY47066 | Canola | nucleus | 48.31 | 45.91 |
| CDY49175 | Canola | nucleus | 49.23 | 45.58 |
| CDY54340 | Canola | nucleus | 47.08 | 45.4 |
| CDX96208 | Canola | nucleus | 48.62 | 45.27 |
| CDY61587 | Canola | nucleus | 48.62 | 43.65 |
| CDY70837 | Canola | nucleus | 19.69 | 43.54 |
| CDY12500 | Canola | nucleus | 20.0 | 41.94 |
| CDX68325 | Canola | nucleus | 21.23 | 41.82 |
| CDY49223 | Canola | nucleus | 21.23 | 41.82 |
| CDY41468 | Canola | nucleus | 20.31 | 41.77 |
| CDY09516 | Canola | nucleus | 20.92 | 41.46 |
| CDX91694 | Canola | nucleus | 20.31 | 40.99 |
| CDY66105 | Canola | nucleus | 20.92 | 40.72 |
| CDY11369 | Canola | nucleus | 32.31 | 37.1 |
| CDX71724 | Canola | nucleus | 31.08 | 35.07 |
| CDY10965 | Canola | nucleus | 31.08 | 34.12 |
| CDY53906 | Canola | nucleus | 29.23 | 33.45 |
| CDY52005 | Canola | nucleus | 29.54 | 33.45 |
| CDX94215 | Canola | nucleus | 31.69 | 32.8 |
| CDX80006 | Canola | nucleus | 26.77 | 32.34 |
| CDX95687 | Canola | nucleus | 24.92 | 31.89 |
| CDY42030 | Canola | nucleus | 26.77 | 31.87 |
| CDY47623 | Canola | nucleus | 30.77 | 31.75 |
| CDY03521 | Canola | nucleus | 31.38 | 31.68 |
| CDX90774 | Canola | nucleus | 24.0 | 28.16 |
| CDY05133 | Canola | nucleus | 23.38 | 27.44 |
| CDX84990 | Canola | nucleus | 17.54 | 22.98 |
| CDY42104 | Canola | nucleus | 11.69 | 21.23 |
| CDY44887 | Canola | nucleus | 20.62 | 21.2 |
| CDY65135 | Canola | nucleus | 20.31 | 21.09 |
| CDY38591 | Canola | nucleus | 19.38 | 20.93 |
| CDY07380 | Canola | nucleus | 20.0 | 20.63 |
| CDY04234 | Canola | nucleus | 20.0 | 20.5 |
| CDX96010 | Canola | nucleus | 19.08 | 20.39 |
| CDY40978 | Canola | nucleus | 14.77 | 18.97 |
| CDY13596 | Canola | nucleus | 18.15 | 18.61 |
| CDX83568 | Canola | nucleus | 17.54 | 18.21 |
| CDX99741 | Canola | nucleus | 17.23 | 17.78 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078GTN9 | UniProt:A0A078GTN9 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY29870 | ProteinID:CDY29870 | ProteinID:CDY29870.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00044316001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF43 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI00025461B1 | SEG:seg | : | : | : | : |
Description
BnaA03g48910DBnaA03g48910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTN9]
Coordinates
chrLK032245:-:227256..228233
Molecular Weight (calculated)
36936.1 Da
IEP (calculated)
4.587
GRAVY (calculated)
-0.632
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMDEYMDFR PVKYTEHKKV IKKYTKKLPV EENKRKNSTG RDSARLVRVC VMDGDATDSS SDDEEEFMFP RRRVKRLINE IRVEPSSSSS GEVSALAAVD
101: SPPQMVSVSG ADQNQKKFRG VRRRPWGKYA AEIRDPVQRR RIWLGTFSTA EEAAVVYDNA AIRLRGPDAL TNFTVPPKPE PEPDRESNVS VYSTSESVED
201: SHHHLSSPTS VLNYHIPEPV DEPVKPVKQE FIEPEPISCH LDEVYNSFPL DITFPDNYFT ETLEDISIFD QSMSPIQSSE SNFFDDLMLF DNSNIGGESY
301: SSKMKEIGSI FNDLDDSLIS ELLVV
101: SPPQMVSVSG ADQNQKKFRG VRRRPWGKYA AEIRDPVQRR RIWLGTFSTA EEAAVVYDNA AIRLRGPDAL TNFTVPPKPE PEPDRESNVS VYSTSESVED
201: SHHHLSSPTS VLNYHIPEPV DEPVKPVKQE FIEPEPISCH LDEVYNSFPL DITFPDNYFT ETLEDISIFD QSMSPIQSSE SNFFDDLMLF DNSNIGGESY
301: SSKMKEIGSI FNDLDDSLIS ELLVV
001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
Arabidopsis Description
CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.