Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71724 | Canola | nucleus | 93.64 | 92.01 |
| CDY52005 | Canola | nucleus | 67.49 | 66.55 |
| CDY53906 | Canola | nucleus | 66.78 | 66.55 |
| AT3G61630.1 | Thale cress | nucleus | 65.72 | 59.05 |
| CDX80006 | Canola | nucleus | 49.12 | 51.67 |
| CDY42030 | Canola | nucleus | 47.35 | 49.08 |
| CDX95687 | Canola | nucleus | 43.82 | 48.82 |
| CDY70837 | Canola | nucleus | 20.49 | 39.46 |
| CDY41468 | Canola | nucleus | 21.2 | 37.97 |
| CDY12500 | Canola | nucleus | 20.49 | 37.42 |
| CDX91694 | Canola | nucleus | 21.2 | 37.27 |
| CDY09516 | Canola | nucleus | 21.55 | 37.2 |
| CDY49223 | Canola | nucleus | 21.55 | 36.97 |
| CDX68325 | Canola | nucleus | 21.55 | 36.97 |
| CDY66105 | Canola | nucleus | 21.55 | 36.53 |
| CDX97406 | Canola | nucleus | 38.16 | 32.93 |
| VIT_15s0046g01390.t01 | Wine grape | nucleus | 36.4 | 32.8 |
| CDX92852 | Canola | nucleus | 37.46 | 32.72 |
| CDY14263 | Canola | nucleus | 37.81 | 32.62 |
| CDY10965 | Canola | nucleus | 33.92 | 32.43 |
| CDY29870 | Canola | nucleus | 37.1 | 32.31 |
| CDY71170 | Canola | nucleus | 36.75 | 30.86 |
| CDX94215 | Canola | nucleus | 33.92 | 30.57 |
| CDY71485 | Canola | nucleus | 36.4 | 30.56 |
| CDY47623 | Canola | nucleus | 32.16 | 28.89 |
| CDY03521 | Canola | nucleus | 32.51 | 28.57 |
| CDY61587 | Canola | nucleus | 35.69 | 27.9 |
| CDX90774 | Canola | nucleus | 26.86 | 27.44 |
| CDY47066 | Canola | nucleus | 32.86 | 27.19 |
| CDY05133 | Canola | nucleus | 26.5 | 27.08 |
| CDY49175 | Canola | nucleus | 33.57 | 27.07 |
| CDX96208 | Canola | nucleus | 33.22 | 26.93 |
| CDY54340 | Canola | nucleus | 31.8 | 26.71 |
| CDX84990 | Canola | nucleus | 20.85 | 23.79 |
| CDY65135 | Canola | nucleus | 23.67 | 21.41 |
| CDY44887 | Canola | nucleus | 23.67 | 21.2 |
| CDY42104 | Canola | nucleus | 13.07 | 20.67 |
| CDY38591 | Canola | nucleus | 21.55 | 20.27 |
| CDY04234 | Canola | nucleus | 22.61 | 20.19 |
| CDX96010 | Canola | nucleus | 21.55 | 20.07 |
| CDY07380 | Canola | nucleus | 22.26 | 20.0 |
| CDX83568 | Canola | nucleus | 20.14 | 18.21 |
| CDY13596 | Canola | nucleus | 20.14 | 17.98 |
| CDY40978 | Canola | nucleus | 15.55 | 17.39 |
| CDX99741 | Canola | nucleus | 17.67 | 15.87 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078FEJ1 | UniProt:A0A078FEJ1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY11369 | ProteinID:CDY11369 | ProteinID:CDY11369.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00049422001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF43 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EF3253 | SEG:seg | : | : | : | : |
Description
BnaA09g39350DBnaA09g39350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEJ1]
Coordinates
chrLK032011:+:53366..54217
Molecular Weight (calculated)
32079.8 Da
IEP (calculated)
4.501
GRAVY (calculated)
-0.783
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MERRTRRVKF TEHHKVTPVP TKPSNDSPRV VRIAYTDPFA TDSSSDDEDH NVTVAPRVKR YVEEIRFGET KSSSSSSRKA RKGGNDDVSA NPVKYRGVRR
101: RPWGKFSAEI RDPSSRSRVW LGTFETAEEA AMVYDRAAIN FRGHNAQTNF LTPPPPPPSS PVIDLETVSG CDSGSQSLRS PTSVLRFNFN EKTEVEIEPI
201: ELATEVEAAS LFPDPYSLPE LCLAGEYFWD SETPPEPLFL DDEIEIRKPF VNPVIPKEEN EPEDFSFDLS EDSWDVDNFF END
101: RPWGKFSAEI RDPSSRSRVW LGTFETAEEA AMVYDRAAIN FRGHNAQTNF LTPPPPPPSS PVIDLETVSG CDSGSQSLRS PTSVLRFNFN EKTEVEIEPI
201: ELATEVEAAS LFPDPYSLPE LCLAGEYFWD SETPPEPLFL DDEIEIRKPF VNPVIPKEEN EPEDFSFDLS EDSWDVDNFF END
001: MERRTRRVKF TENRTVTNVA ATPSNGSPRL VRITVTDPFA TDSSSDDDDN NNVTVVPRVK RYVKEIRFCQ GESSSSTAAR KGKHKEEESV VVEDDVSTSV
101: KPKKYRGVRQ RPWGKFAAEI RDPSSRTRIW LGTFVTAEEA AIAYDRAAIH LKGPKALTNF LTPPTPTPVI DLQTVSACDY GRDSRQSLHS PTSVLRFNVN
201: EETEHEIEAI ELSPERKSTV IKEEEESSAG LVFPDPYLLP DLSLAGECFW DTEIAPDLLF LDEETKIQST LLPNTEVSKQ GENETEDFEF GLIDDFESSP
301: WDVDHFFDHH HHSFD
101: KPKKYRGVRQ RPWGKFAAEI RDPSSRTRIW LGTFVTAEEA AIAYDRAAIH LKGPKALTNF LTPPTPTPVI DLQTVSACDY GRDSRQSLHS PTSVLRFNVN
201: EETEHEIEAI ELSPERKSTV IKEEEESSAG LVFPDPYLLP DLSLAGECFW DTEIAPDLLF LDEETKIQST LLPNTEVSKQ GENETEDFEF GLIDDFESSP
301: WDVDHFFDHH HHSFD
Arabidopsis Description
CRF6CRF6 [Source:UniProtKB/TrEMBL;Acc:A0A178VFH2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.