Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72337 | Canola | nucleus | 77.89 | 76.1 |
| CDY13465 | Canola | nucleus | 76.52 | 75.48 |
| AT4G31920.1 | Thale cress | nucleus | 72.99 | 67.57 |
| CDX87845 | Canola | cytosol, extracellular | 17.03 | 64.93 |
| CDY52720 | Canola | nucleus | 20.35 | 55.62 |
| CDY54632 | Canola | cytosol | 16.05 | 55.41 |
| CDY35371 | Canola | nucleus | 62.43 | 54.91 |
| CDY70103 | Canola | nucleus | 61.84 | 54.77 |
| CDX82391 | Canola | cytosol | 15.85 | 54.73 |
| CDY54630 | Canola | cytosol | 16.05 | 52.9 |
| CDX73905 | Canola | nucleus | 7.83 | 40.0 |
| CDY49965 | Canola | mitochondrion | 25.64 | 38.87 |
| CDY64566 | Canola | nucleus | 25.44 | 34.57 |
| CDY09419 | Canola | nucleus | 25.24 | 34.22 |
| Solyc07g005140.2.1 | Tomato | nucleus | 42.47 | 32.63 |
| Os02t0182100-01 | Rice | nucleus | 38.75 | 31.63 |
| CDX75892 | Canola | nucleus | 27.79 | 31.42 |
| EES06387 | Sorghum | nucleus | 38.75 | 31.38 |
| CDY56439 | Canola | nucleus | 16.63 | 30.91 |
| CDX86245 | Canola | nucleus | 16.44 | 30.77 |
| TraesCS6B01G174400.1 | Wheat | nucleus | 37.38 | 30.71 |
| PGSC0003DMT400020233 | Potato | nucleus | 42.47 | 30.69 |
| Solyc12g010330.1.1 | Tomato | nucleus | 42.47 | 30.65 |
| Zm00001d015521_P001 | Maize | nucleus | 37.77 | 30.59 |
| HORVU6Hr1G028680.1 | Barley | nucleus | 37.18 | 30.5 |
| GSMUA_Achr3P13400_001 | Banana | nucleus | 37.38 | 30.41 |
| TraesCS6A01G146200.3 | Wheat | nucleus | 37.18 | 29.69 |
| TraesCS6D01G135500.3 | Wheat | nucleus | 37.18 | 29.46 |
| CDY02794 | Canola | nucleus | 27.4 | 29.35 |
| CDY68249 | Canola | nucleus | 25.05 | 29.29 |
| CDX95898 | Canola | nucleus | 28.57 | 28.91 |
| CDX73907 | Canola | nucleus | 7.63 | 28.89 |
| CDX92102 | Canola | nucleus | 28.18 | 28.69 |
| PGSC0003DMT400008290 | Potato | nucleus | 42.47 | 28.07 |
| CDY28869 | Canola | nucleus | 27.4 | 27.61 |
| CDY01838 | Canola | nucleus | 26.81 | 27.4 |
| CDY07410 | Canola | nucleus | 27.2 | 27.31 |
| CDX96070 | Canola | nucleus | 27.4 | 27.29 |
| CDX90546 | Canola | nucleus | 30.53 | 26.44 |
| CDY09718 | Canola | nucleus | 30.33 | 25.79 |
| CDX82389 | Canola | nucleus | 29.55 | 24.79 |
| CDY32725 | Canola | nucleus | 29.94 | 24.56 |
| CDY02793 | Canola | nucleus | 29.94 | 24.44 |
| CDY33920 | Canola | nucleus | 19.37 | 22.86 |
| CDY08579 | Canola | nucleus | 10.76 | 22.73 |
| CDY05641 | Canola | nucleus | 19.77 | 22.65 |
| CDY11437 | Canola | nucleus | 18.2 | 22.14 |
| CDX76652 | Canola | nucleus | 18.0 | 21.96 |
| CDY16482 | Canola | nucleus | 18.4 | 21.36 |
| CDX80940 | Canola | nucleus | 9.98 | 20.9 |
| CDX77263 | Canola | nucleus | 18.4 | 20.89 |
| CDY52133 | Canola | nucleus | 10.18 | 20.8 |
| CDY53674 | Canola | nucleus | 9.98 | 20.56 |
| CDX79963 | Canola | nucleus | 9.78 | 20.24 |
| CDX82988 | Canola | nucleus | 10.18 | 20.08 |
| CDY00969 | Canola | nucleus | 11.15 | 20.07 |
| CDX98816 | Canola | nucleus | 9.98 | 19.54 |
| CDX68392 | Canola | nucleus | 9.98 | 19.47 |
| CDY29358 | Canola | nucleus | 19.18 | 19.41 |
| CDY61256 | Canola | nucleus | 10.18 | 18.98 |
| CDX98997 | Canola | nucleus | 21.92 | 18.7 |
| CDX70016 | Canola | nucleus | 21.92 | 18.67 |
| CDX99104 | Canola | nucleus | 10.57 | 18.62 |
| CDY04335 | Canola | nucleus | 18.59 | 17.99 |
| CDY67763 | Canola | nucleus | 20.74 | 17.85 |
| CDY36273 | Canola | mitochondrion | 8.02 | 17.15 |
| CDX81041 | Canola | nucleus | 18.59 | 16.78 |
| CDX78284 | Canola | nucleus | 18.0 | 16.2 |
| CDY32209 | Canola | nucleus | 14.68 | 15.89 |
| CDY34423 | Canola | nucleus | 14.48 | 15.58 |
| CDY14053 | Canola | nucleus | 20.55 | 14.04 |
| CDX86925 | Canola | nucleus | 14.68 | 11.08 |
| CDY30695 | Canola | nucleus | 14.29 | 9.69 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:11.4.2.4 | MapMan:15.5.23 | Gene3D:3.40.50.2300 | GO:A0A078C0Z5 | EnsemblPlants:CDX68803 |
| ProteinID:CDX68803 | ProteinID:CDX68803.1 | InterPro:CheY-like_superfamily | ncoils:Coil | GO:GO:0000160 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00130521001 |
| InterPro:Homeobox-like_sf | InterPro:IPR001789 | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00072 |
| PFAM:PF00249 | PIRSF:PIRSF036392 | PFscan:PS50110 | PFscan:PS51294 | PANTHER:PTHR43874 | PANTHER:PTHR43874:SF7 |
| InterPro:Response_reg_B-typ_pln | InterPro:SANT/Myb | SMART:SM00448 | SUPFAM:SSF46689 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver |
| TIGRFAMs:TIGR01557 | UniParc:UPI0004EE546E | SEG:seg | : | : | : |
Description
BnaC01g06500D
Coordinates
chrLK031789:-:1359104..1361726
Molecular Weight (calculated)
57367.0 Da
IEP (calculated)
6.619
GRAVY (calculated)
-0.529
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVEQGIEAV DQFPVGMRVL AVDDDHTCLR ILETLLHRCQ YHVTTTDKAQ TALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMNL PVIMLSAHSD
101: PKYVMKGVKH GACDYLLKPV RIEELKNIWQ HVVRKSKLKK MKGIVTNGES EGNSDQNGVR ANRKCKDQLE EKDEEEQEQE RGNDKKPRVI WTRELHNKFL
201: AAVDHVGFKN AVPKKILDLM NVDNLTRENV ASHLQKFRLA LKKITNEAKQ QANMAAANSH FMQMSSLKGF GSFHHSPIPL GSSQFHGGAA TMRHYPSNRT
301: FAGMFPHVSS SLPRNLHNDG GHMLQGTPFP PLENLHINSN NKAFPSFASQ QSSLLVAPSM VLEGHQQSTS PSFSPHLEIN KRLEDWSNNI PQSNVHSEPD
401: ALGWNMFGNS TNQTYFCRDT DFGSSSAAHA DSLQMKQQHE NIFSPMTVAQ LLRSSSANEG LFMGQQKLED GFMASDAGSL DDIVNSMMTQ FFECSRNSQA
501: EFSEGDWVWV A
101: PKYVMKGVKH GACDYLLKPV RIEELKNIWQ HVVRKSKLKK MKGIVTNGES EGNSDQNGVR ANRKCKDQLE EKDEEEQEQE RGNDKKPRVI WTRELHNKFL
201: AAVDHVGFKN AVPKKILDLM NVDNLTRENV ASHLQKFRLA LKKITNEAKQ QANMAAANSH FMQMSSLKGF GSFHHSPIPL GSSQFHGGAA TMRHYPSNRT
301: FAGMFPHVSS SLPRNLHNDG GHMLQGTPFP PLENLHINSN NKAFPSFASQ QSSLLVAPSM VLEGHQQSTS PSFSPHLEIN KRLEDWSNNI PQSNVHSEPD
401: ALGWNMFGNS TNQTYFCRDT DFGSSSAAHA DSLQMKQQHE NIFSPMTVAQ LLRSSSANEG LFMGQQKLED GFMASDAGSL DDIVNSMMTQ FFECSRNSQA
501: EFSEGDWVWV A
001: MTMEQEIEVL DQFPVGMRVL AVDDDQTCLR ILQTLLQRCQ YHVTTTNQAQ TALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVKH GACDYLLKPV RIEELKNIWQ HVVRKSKLKK NKSNVSNGSG NCDKANRKRK EQYEEEEEEE RGNDNDDPTA QKKPRVLWTH ELHNKFLAAV
201: DHLGVERAVP KKILDLMNVD KLTRENVASH LQKFRVALKK VSDDAIQQAN RAAIDSHFMQ MNSQKGLGGF YHHHRGIPVG SGQFHGGTTM MRHYSSNRNL
301: GRLNSLGAGM FQPVSSSFPR NHNDGGNILQ GLPLEELQIN NNINRAFPSF TSQQNSPMVA PSNLLLLEGN PQSSSLPSNP GFSPHFEISK RLEHWSNAAL
401: STNIPQSDVH SKPDTLEWNA FCDSASPLVN PNLDTNPASL CRNTGFGSTN AAQTDFFYPL QMNQQPANNS GPVTEAQLFR SSNPNEGLLM GQQKLQSGLM
501: ASDAGSLDDI VNSLMTQEQS QSDFSEGDWD LDGLAHSEHA YEKLHFPFSL SA
101: PKYVMKGVKH GACDYLLKPV RIEELKNIWQ HVVRKSKLKK NKSNVSNGSG NCDKANRKRK EQYEEEEEEE RGNDNDDPTA QKKPRVLWTH ELHNKFLAAV
201: DHLGVERAVP KKILDLMNVD KLTRENVASH LQKFRVALKK VSDDAIQQAN RAAIDSHFMQ MNSQKGLGGF YHHHRGIPVG SGQFHGGTTM MRHYSSNRNL
301: GRLNSLGAGM FQPVSSSFPR NHNDGGNILQ GLPLEELQIN NNINRAFPSF TSQQNSPMVA PSNLLLLEGN PQSSSLPSNP GFSPHFEISK RLEHWSNAAL
401: STNIPQSDVH SKPDTLEWNA FCDSASPLVN PNLDTNPASL CRNTGFGSTN AAQTDFFYPL QMNQQPANNS GPVTEAQLFR SSNPNEGLLM GQQKLQSGLM
501: ASDAGSLDDI VNSLMTQEQS QSDFSEGDWD LDGLAHSEHA YEKLHFPFSL SA
Arabidopsis Description
ARR10Two-component response regulator ARR10 [Source:UniProtKB/Swiss-Prot;Acc:O49397]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.