Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004593.1-P | Field mustard | nucleus | 99.6 | 99.6 |
| CDY53674 | Canola | nucleus | 95.95 | 95.56 |
| AT2G40970.1 | Thale cress | nucleus | 82.59 | 82.26 |
| CDX98816 | Canola | nucleus | 53.04 | 50.19 |
| CDY52133 | Canola | nucleus | 50.61 | 50.0 |
| CDY00969 | Canola | nucleus | 57.49 | 50.0 |
| CDX80940 | Canola | nucleus | 49.39 | 50.0 |
| CDY08579 | Canola | nucleus | 48.58 | 49.59 |
| KRH71692 | Soybean | nucleus | 51.82 | 49.23 |
| VIT_08s0040g00900.t01 | Wine grape | nucleus | 59.92 | 48.37 |
| KRG95053 | Soybean | nucleus | 59.11 | 46.79 |
| CDX73905 | Canola | nucleus | 17.81 | 44.0 |
| CDY36273 | Canola | mitochondrion | 39.27 | 40.59 |
| CDX73907 | Canola | nucleus | 19.84 | 36.3 |
| CDY61256 | Canola | nucleus | 38.87 | 35.04 |
| CDX68392 | Canola | nucleus | 36.84 | 34.73 |
| CDX82988 | Canola | nucleus | 36.03 | 34.36 |
| CDX99104 | Canola | nucleus | 39.68 | 33.79 |
| CDY52720 | Canola | nucleus | 16.6 | 21.93 |
| CDY09419 | Canola | nucleus | 21.86 | 14.32 |
| CDX86245 | Canola | nucleus | 15.79 | 14.29 |
| CDY56439 | Canola | nucleus | 15.79 | 14.18 |
| CDY64566 | Canola | nucleus | 21.46 | 14.1 |
| CDX75892 | Canola | nucleus | 22.67 | 12.39 |
| CDY68249 | Canola | nucleus | 21.46 | 12.13 |
| CDY02794 | Canola | nucleus | 23.08 | 11.95 |
| CDX92102 | Canola | nucleus | 23.08 | 11.35 |
| CDX95898 | Canola | nucleus | 23.08 | 11.29 |
| CDY33920 | Canola | nucleus | 19.43 | 11.09 |
| CDY11437 | Canola | nucleus | 18.62 | 10.95 |
| CDX76652 | Canola | nucleus | 18.22 | 10.74 |
| CDY01838 | Canola | nucleus | 21.46 | 10.6 |
| CDY05641 | Canola | nucleus | 19.03 | 10.54 |
| CDY32209 | Canola | nucleus | 19.84 | 10.38 |
| CDY34423 | Canola | nucleus | 19.84 | 10.32 |
| CDY28869 | Canola | nucleus | 21.05 | 10.26 |
| CDY07410 | Canola | nucleus | 21.05 | 10.22 |
| CDY35371 | Canola | nucleus | 23.89 | 10.15 |
| CDX96070 | Canola | nucleus | 21.05 | 10.14 |
| CDY70103 | Canola | nucleus | 23.48 | 10.05 |
| CDY09718 | Canola | nucleus | 23.89 | 9.82 |
| CDX68803 | Canola | nucleus | 20.24 | 9.78 |
| CDX72337 | Canola | nucleus | 20.65 | 9.75 |
| CDX82389 | Canola | nucleus | 23.89 | 9.69 |
| CDY13465 | Canola | nucleus | 20.24 | 9.65 |
| CDX90546 | Canola | nucleus | 22.67 | 9.49 |
| CDY32725 | Canola | nucleus | 23.08 | 9.15 |
| CDY02793 | Canola | nucleus | 23.08 | 9.11 |
| CDY16482 | Canola | nucleus | 15.38 | 8.64 |
| CDX77263 | Canola | nucleus | 15.38 | 8.44 |
| CDY29358 | Canola | nucleus | 17.0 | 8.32 |
| CDY04335 | Canola | nucleus | 17.41 | 8.14 |
| CDX81041 | Canola | nucleus | 18.62 | 8.13 |
| CDX98997 | Canola | nucleus | 19.43 | 8.01 |
| CDX70016 | Canola | nucleus | 19.43 | 8.0 |
| CDX78284 | Canola | nucleus | 18.22 | 7.92 |
| CDY67763 | Canola | nucleus | 18.22 | 7.58 |
| CDY14053 | Canola | nucleus | 17.81 | 5.88 |
| CDY30695 | Canola | nucleus | 15.79 | 5.18 |
| CDY54630 | Canola | cytosol | 3.24 | 5.16 |
| CDX86925 | Canola | nucleus | 13.77 | 5.02 |
| CDY54632 | Canola | cytosol | 2.43 | 4.05 |
| CDX82391 | Canola | cytosol | 2.43 | 4.05 |
| CDX87845 | Canola | cytosol, extracellular | 1.62 | 2.99 |
| CDY49965 | Canola | mitochondrion | 4.05 | 2.97 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | GO:A0A078CXW2 | EnsemblPlants:CDX79963 | ProteinID:CDX79963 | ProteinID:CDX79963.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00132825001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 |
| PANTHER:PTHR31442:SF1 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EDEF6F | SEG:seg |
Description
BnaA05g01930D
Coordinates
chrLK031819:+:1068726..1069469
Molecular Weight (calculated)
27198.6 Da
IEP (calculated)
9.556
GRAVY (calculated)
-0.474
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MREETPNWLV RWEEELPSPE ELIPISQTLI TPHLALAFQI GSHNNHSSPK RTVAMYHQKL QPAATPTPTM MNSDFAVDSS TDLGSGGGGG GGEEPARTLK
101: RPRLVWTPQL HKRFVDAVGH LGIKNAVPKT IMQLMSVEGL TRENVASHLQ KYRLYLRRMQ GGNDNGVSGG HVIVSDSATD RLFASSPVPA HLLSHEYLMP
201: SPLMNPYLGK HVVTQQNHVV RNLRYEGSEY GNGDGGRKVL KLFPAGN
101: RPRLVWTPQL HKRFVDAVGH LGIKNAVPKT IMQLMSVEGL TRENVASHLQ KYRLYLRRMQ GGNDNGVSGG HVIVSDSATD RLFASSPVPA HLLSHEYLMP
201: SPLMNPYLGK HVVTQQNHVV RNLRYEGSEY GNGDGGRKVL KLFPAGN
001: MREDNPNWFL RWEEELPSPE ELIPISQTLI TPHLALAFQI GSPNHHLGSK RTTAIYHQKL QSSTTPTTPT PTPPPMMMNS DFGGGDSTDL GSGSIGGEPA
101: RTLKRPRLVW TPQLHKRFVD AVGHLGIKNA VPKTIMQLMS VEGLTRENVA SHLQKYRLYL RRMQGGNGNG ITGGHVIVSD SATDRLFASS PVPAHFLSPD
201: YLMPPLEHSY MGKHVITQQN QVVRNLRYED SEYGHGSMKM LKLFPAGN
101: RTLKRPRLVW TPQLHKRFVD AVGHLGIKNA VPKTIMQLMS VEGLTRENVA SHLQKYRLYL RRMQGGNGNG ITGGHVIVSD SATDRLFASS PVPAHFLSPD
201: YLMPPLEHSY MGKHVITQQN QVVRNLRYED SEYGHGSMKM LKLFPAGN
Arabidopsis Description
MYBC1MYBC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VYV1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.