Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52133 | Canola | nucleus | 88.11 | 86.0 |
| Bra005837.1-P | Field mustard | nucleus | 87.3 | 84.86 |
| CDX98816 | Canola | nucleus | 80.33 | 75.1 |
| CDY00969 | Canola | nucleus | 63.93 | 54.93 |
| VIT_08s0040g00900.t01 | Wine grape | nucleus | 63.93 | 50.98 |
| CDY53674 | Canola | nucleus | 50.82 | 50.0 |
| CDX79963 | Canola | nucleus | 50.0 | 49.39 |
| CDY08579 | Canola | nucleus | 48.77 | 49.17 |
| CDY36273 | Canola | mitochondrion | 47.95 | 48.95 |
| KRH71692 | Soybean | nucleus | 51.23 | 48.08 |
| KRG95053 | Soybean | nucleus | 59.02 | 46.15 |
| CDX73905 | Canola | nucleus | 17.62 | 43.0 |
| CDX73907 | Canola | nucleus | 19.67 | 35.56 |
| CDX68392 | Canola | nucleus | 35.66 | 33.21 |
| CDX82988 | Canola | nucleus | 35.25 | 33.2 |
| CDY61256 | Canola | nucleus | 36.48 | 32.48 |
| CDX99104 | Canola | nucleus | 37.3 | 31.38 |
| CDY52720 | Canola | nucleus | 15.57 | 20.32 |
| CDY09419 | Canola | nucleus | 20.49 | 13.26 |
| CDY64566 | Canola | nucleus | 20.08 | 13.03 |
| CDX86245 | Canola | nucleus | 14.34 | 12.82 |
| CDY56439 | Canola | nucleus | 14.34 | 12.73 |
| CDY02794 | Canola | nucleus | 22.13 | 11.32 |
| CDY68249 | Canola | nucleus | 20.08 | 11.21 |
| CDX75892 | Canola | nucleus | 20.49 | 11.06 |
| CDY11437 | Canola | nucleus | 18.44 | 10.71 |
| CDX95898 | Canola | nucleus | 22.13 | 10.69 |
| CDY70103 | Canola | nucleus | 25.0 | 10.57 |
| CDX76652 | Canola | nucleus | 18.03 | 10.5 |
| CDX92102 | Canola | nucleus | 21.31 | 10.36 |
| CDY01838 | Canola | nucleus | 20.9 | 10.2 |
| CDY35371 | Canola | nucleus | 24.18 | 10.15 |
| CDY28869 | Canola | nucleus | 20.9 | 10.06 |
| CDX68803 | Canola | nucleus | 20.9 | 9.98 |
| CDY33920 | Canola | nucleus | 17.62 | 9.93 |
| CDY13465 | Canola | nucleus | 20.9 | 9.85 |
| CDY07410 | Canola | nucleus | 20.49 | 9.82 |
| CDX72337 | Canola | nucleus | 20.9 | 9.75 |
| CDX96070 | Canola | nucleus | 20.49 | 9.75 |
| CDY32209 | Canola | nucleus | 18.85 | 9.75 |
| CDY34423 | Canola | nucleus | 18.85 | 9.68 |
| CDX90546 | Canola | nucleus | 23.36 | 9.66 |
| CDY09718 | Canola | nucleus | 22.95 | 9.32 |
| CDY05641 | Canola | nucleus | 16.8 | 9.19 |
| CDY32725 | Canola | nucleus | 22.95 | 8.99 |
| CDY02793 | Canola | nucleus | 22.95 | 8.95 |
| CDX82389 | Canola | nucleus | 21.72 | 8.7 |
| CDY67763 | Canola | nucleus | 20.9 | 8.59 |
| CDY16482 | Canola | nucleus | 15.16 | 8.41 |
| CDX98997 | Canola | nucleus | 20.49 | 8.35 |
| CDX70016 | Canola | nucleus | 20.49 | 8.33 |
| CDX77263 | Canola | nucleus | 15.16 | 8.22 |
| CDX78284 | Canola | nucleus | 18.44 | 7.92 |
| CDX81041 | Canola | nucleus | 18.03 | 7.77 |
| CDY29358 | Canola | nucleus | 13.93 | 6.73 |
| CDY14053 | Canola | nucleus | 20.49 | 6.68 |
| CDY04335 | Canola | nucleus | 14.34 | 6.63 |
| CDY30695 | Canola | nucleus | 19.26 | 6.24 |
| CDX86925 | Canola | nucleus | 15.98 | 5.76 |
| CDY54630 | Canola | cytosol | 2.87 | 4.52 |
| CDY49965 | Canola | mitochondrion | 4.92 | 3.56 |
| CDY54632 | Canola | cytosol | 2.05 | 3.38 |
| CDX82391 | Canola | cytosol | 2.05 | 3.38 |
| CDX87845 | Canola | cytosol, extracellular | 1.64 | 2.99 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | GO:A0A078CVP8 | EnsemblPlants:CDX80940 | ProteinID:CDX80940 | ProteinID:CDX80940.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00134354001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 |
| PANTHER:PTHR31442:SF1 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE90AA | SEG:seg |
Description
BnaC03g01940D
Coordinates
chrLK031823:+:929808..930542
Molecular Weight (calculated)
26973.2 Da
IEP (calculated)
9.793
GRAVY (calculated)
-0.464
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDEEEELPS PEELIPLSQS LITPHLALAF DLRSTHHRNN GNSGYPLPQT TPPQANSSAG DEPARTLKRP RLVWTPQLHK RFVDAVAHIG IKNAVPKTIM
101: QLMSVEGLTR ENVASHLQKY RLYLKRMQSG EGGRGGNVGE SDHLFASSPV PAHFLHPTGR QSSDHFIPSF VPMAATLPHP QLLHGRISAV KMDQSLFLAR
201: PSQQQPVAIV RPSSLHLHSQ VANYANDLEP GAKTVLTLFP TRQD
101: QLMSVEGLTR ENVASHLQKY RLYLKRMQSG EGGRGGNVGE SDHLFASSPV PAHFLHPTGR QSSDHFIPSF VPMAATLPHP QLLHGRISAV KMDQSLFLAR
201: PSQQQPVAIV RPSSLHLHSQ VANYANDLEP GAKTVLTLFP TRQD
001: MREEDSNWFA KWEEELPSPE ELIPLSQSLI TPDLAIAFDL HRNNNSNSGQ PLPQTTPPQP NSSAEIAGDS TGDEPARTLK RPRLVWTPQL HKRFVDAVAH
101: LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMK SGGGGGGSGD SDHLFASSPV PPHFLHPTSR QSSDLFIPSF VPISTQQQHI AAPPSQFLHR
201: QISAVNFTSP TKATDQAMFL ARQQSELQQP VFKPSSLHLH SQVANYTQDL KSGAKTVLTL FPTRDD
101: LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMK SGGGGGGSGD SDHLFASSPV PPHFLHPTSR QSSDLFIPSF VPISTQQQHI AAPPSQFLHR
201: QISAVNFTSP TKATDQAMFL ARQQSELQQP VFKPSSLHLH SQVANYTQDL KSGAKTVLTL FPTRDD
Arabidopsis Description
At5g05090 [Source:UniProtKB/TrEMBL;Acc:Q9FF65]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.