Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99104 | Canola | nucleus | 93.8 | 88.62 |
| Bra018204.1-P | Field mustard | nucleus | 92.7 | 83.55 |
| CDX68392 | Canola | nucleus | 77.74 | 81.3 |
| CDX82988 | Canola | nucleus | 74.82 | 79.15 |
| AT3G46640.3 | Thale cress | nucleus | 78.1 | 66.05 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 45.26 | 54.15 |
| Solyc06g005680.2.1 | Tomato | nucleus | 50.0 | 51.5 |
| Os01t0971800-00 | Rice | nucleus | 44.16 | 50.84 |
| Zm00001d011785_P001 | Maize | nucleus | 39.42 | 49.32 |
| PGSC0003DMT400005490 | Potato | nucleus | 54.01 | 49.01 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 54.38 | 47.91 |
| GSMUA_Achr10P... | Banana | nucleus | 46.35 | 45.52 |
| KRH24748 | Soybean | nucleus | 50.73 | 45.42 |
| Zm00001d041960_P001 | Maize | nucleus | 42.7 | 45.35 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 45.26 | 45.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.27 | 44.26 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 45.99 | 44.21 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 45.26 | 44.13 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 45.99 | 43.9 |
| KRH29751 | Soybean | nucleus | 50.73 | 43.03 |
| CDX73905 | Canola | nucleus | 15.69 | 43.0 |
| PGSC0003DMT400077979 | Potato | nucleus | 48.54 | 42.36 |
| Solyc06g076350.2.1 | Tomato | nucleus | 48.18 | 40.99 |
| CDX79963 | Canola | nucleus | 35.04 | 38.87 |
| CDY53674 | Canola | nucleus | 34.67 | 38.31 |
| CDY08579 | Canola | nucleus | 32.85 | 37.19 |
| CDX98816 | Canola | nucleus | 35.04 | 36.78 |
| CDX80940 | Canola | nucleus | 32.48 | 36.48 |
| CDY52133 | Canola | nucleus | 32.48 | 35.6 |
| CDY00969 | Canola | nucleus | 36.86 | 35.56 |
| CDX73907 | Canola | nucleus | 16.79 | 34.07 |
| CDY36273 | Canola | mitochondrion | 25.18 | 28.87 |
| CDY52720 | Canola | nucleus | 15.69 | 22.99 |
| CDY64566 | Canola | nucleus | 20.8 | 15.16 |
| CDY09419 | Canola | nucleus | 20.44 | 14.85 |
| CDX86245 | Canola | nucleus | 14.6 | 14.65 |
| CDY56439 | Canola | nucleus | 14.6 | 14.55 |
| CDY68249 | Canola | nucleus | 20.8 | 13.04 |
| CDX75892 | Canola | nucleus | 20.8 | 12.61 |
| CDY33920 | Canola | nucleus | 18.98 | 12.01 |
| CDY02794 | Canola | nucleus | 20.44 | 11.74 |
| CDX92102 | Canola | nucleus | 21.17 | 11.55 |
| CDX95898 | Canola | nucleus | 21.17 | 11.49 |
| CDX76652 | Canola | nucleus | 17.52 | 11.46 |
| CDY05641 | Canola | nucleus | 18.61 | 11.44 |
| CDY11437 | Canola | nucleus | 17.15 | 11.19 |
| CDY70103 | Canola | nucleus | 23.36 | 11.09 |
| CDY35371 | Canola | nucleus | 22.99 | 10.84 |
| CDX68803 | Canola | nucleus | 18.98 | 10.18 |
| CDY32209 | Canola | nucleus | 17.52 | 10.17 |
| CDX90546 | Canola | nucleus | 21.53 | 10.0 |
| CDX72337 | Canola | nucleus | 18.98 | 9.94 |
| CDY34423 | Canola | nucleus | 17.15 | 9.89 |
| CDY13465 | Canola | nucleus | 18.61 | 9.85 |
| CDY16482 | Canola | nucleus | 15.69 | 9.77 |
| CDX82389 | Canola | nucleus | 21.53 | 9.69 |
| CDY09718 | Canola | nucleus | 21.17 | 9.65 |
| CDY01838 | Canola | nucleus | 17.52 | 9.6 |
| CDX77263 | Canola | nucleus | 15.33 | 9.33 |
| CDX96070 | Canola | nucleus | 17.15 | 9.16 |
| CDY02793 | Canola | nucleus | 20.8 | 9.11 |
| CDY32725 | Canola | nucleus | 20.44 | 8.99 |
| CDY29358 | Canola | nucleus | 16.42 | 8.91 |
| CDY28869 | Canola | nucleus | 16.42 | 8.88 |
| CDY07410 | Canola | nucleus | 16.42 | 8.84 |
| CDY67763 | Canola | nucleus | 18.98 | 8.75 |
| CDY04335 | Canola | nucleus | 16.79 | 8.71 |
| CDX98997 | Canola | nucleus | 18.61 | 8.51 |
| CDX70016 | Canola | nucleus | 18.61 | 8.5 |
| CDX78284 | Canola | nucleus | 16.79 | 8.1 |
| CDX81041 | Canola | nucleus | 16.42 | 7.95 |
| CDY14053 | Canola | nucleus | 18.98 | 6.95 |
| CDX86925 | Canola | nucleus | 15.33 | 6.2 |
| CDY30695 | Canola | nucleus | 16.42 | 5.98 |
| CDY54630 | Canola | cytosol | 3.28 | 5.81 |
| CDX82391 | Canola | cytosol | 2.92 | 5.41 |
| CDY54632 | Canola | cytosol | 2.92 | 5.41 |
| CDX87845 | Canola | cytosol, extracellular | 2.19 | 4.48 |
| CDY49965 | Canola | mitochondrion | 3.65 | 2.97 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | GO:A0A078JB42 | UniProt:A0A078JB42 | EnsemblPlants:CDY61256 | ProteinID:CDY61256 |
| ProteinID:CDY61256.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00033615001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 |
| PANTHER:PTHR31442:SF12 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EF0365 | SEG:seg |
Description
BnaCnng37560DBnaCnng37560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JB42]
Coordinates
chrLK033975:+:24796..27071
Molecular Weight (calculated)
29623.2 Da
IEP (calculated)
6.229
GRAVY (calculated)
-0.738
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEVRMSDY DVSGDGDRVL EWEMGLPSDD DLTSLSYSLI PPNLAMAFSI TPEKSRTIED VNRASETTFS SLRSGSSGLN TSSSNNNSTS GDGVDLSTAT
101: AAEEGDSGTE DPTGKTLKRP RLVWTPQLHK RFVDVVAHLG IKNAVPKTIM QLMNVEGLTR ENVASHLQKY RLYLKRMQGL TTEGPSSSDK LFSSTPVPPQ
201: SFQEIGGGNG SGNGQGNVSA GYHHQSHGHD PYHQNRQHHH GAGGFEANPY MMQQNKFGSM ASYPPVGGRS AHEN
101: AAEEGDSGTE DPTGKTLKRP RLVWTPQLHK RFVDVVAHLG IKNAVPKTIM QLMNVEGLTR ENVASHLQKY RLYLKRMQGL TTEGPSSSDK LFSSTPVPPQ
201: SFQEIGGGNG SGNGQGNVSA GYHHQSHGHD PYHQNRQHHH GAGGFEANPY MMQQNKFGSM ASYPPVGGRS AHEN
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.