Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P07060_001 | Banana | nucleus | 59.5 | 72.49 |
| GSMUA_AchrUn_... | Banana | nucleus | 60.57 | 55.41 |
| Os01t0971800-00 | Rice | nucleus | 46.95 | 55.04 |
| Zm00001d011785_P001 | Maize | nucleus | 41.58 | 52.97 |
| Solyc06g005680.2.1 | Tomato | nucleus | 50.18 | 52.63 |
| Zm00001d041960_P001 | Maize | nucleus | 47.31 | 51.16 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 48.75 | 49.63 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 55.2 | 49.52 |
| PGSC0003DMT400005490 | Potato | nucleus | 53.05 | 49.01 |
| KRH24748 | Soybean | nucleus | 53.05 | 48.37 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 48.39 | 48.04 |
| CDX82988 | Canola | nucleus | 44.44 | 47.88 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 49.1 | 47.74 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 48.75 | 47.72 |
| CDX68392 | Canola | nucleus | 44.44 | 47.33 |
| CDY61256 | Canola | nucleus | 45.52 | 46.35 |
| CDX99104 | Canola | nucleus | 47.31 | 45.52 |
| KRH29751 | Soybean | nucleus | 52.69 | 45.51 |
| KRH76596 | Soybean | mitochondrion | 19.35 | 44.63 |
| PGSC0003DMT400077979 | Potato | nucleus | 49.82 | 44.27 |
| Bra033809.1-P | Field mustard | nucleus | 45.16 | 44.21 |
| AT5G59570.2 | Thale cress | nucleus | 46.59 | 43.62 |
| Bra018204.1-P | Field mustard | nucleus | 46.24 | 42.43 |
| Solyc06g076350.2.1 | Tomato | nucleus | 48.39 | 41.93 |
| AT3G46640.3 | Thale cress | nucleus | 48.03 | 41.36 |
| GSMUA_Achr11P... | Banana | nucleus | 38.35 | 35.31 |
| GSMUA_Achr8P05880_001 | Banana | nucleus | 39.07 | 34.6 |
| GSMUA_Achr5P27500_001 | Banana | nucleus | 35.13 | 34.51 |
| GSMUA_Achr10P... | Banana | nucleus | 29.03 | 33.75 |
| GSMUA_Achr2P01920_001 | Banana | nucleus, plastid | 32.97 | 31.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.41 | 16.17 |
| GSMUA_Achr3P14630_001 | Banana | cytosol | 17.92 | 13.7 |
| GSMUA_Achr5P13050_001 | Banana | cytosol | 10.39 | 12.66 |
| GSMUA_Achr5P16510_001 | Banana | cytosol, nucleus, plastid | 9.68 | 12.5 |
| GSMUA_Achr10P... | Banana | nucleus | 19.0 | 12.21 |
| GSMUA_Achr3P13400_001 | Banana | nucleus | 24.73 | 10.99 |
| GSMUA_Achr11P... | Banana | nucleus | 24.01 | 10.6 |
| GSMUA_Achr8P32070_001 | Banana | nucleus | 20.07 | 10.28 |
| GSMUA_Achr10P... | Banana | nucleus | 23.3 | 9.95 |
| GSMUA_Achr2P05130_001 | Banana | nucleus | 22.94 | 9.94 |
| GSMUA_Achr8P30850_001 | Banana | nucleus | 24.73 | 9.58 |
| GSMUA_Achr1P22230_001 | Banana | nucleus | 24.73 | 9.54 |
| GSMUA_Achr11P... | Banana | nucleus | 22.22 | 9.41 |
| GSMUA_Achr9P16610_001 | Banana | nucleus | 23.3 | 8.99 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr10G02420_001 |
| EnsemblPlants:GSMUA_Achr10P02420_001 | EnsemblPlants:GSMUA_Achr10T02420_001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0RER9 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 | PANTHER:PTHR31442:SF12 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000296651E | SEG:seg | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G02420_001]
Coordinates
chr10:-:7134329..7138339
Molecular Weight (calculated)
30729.3 Da
IEP (calculated)
6.180
GRAVY (calculated)
-0.494
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEAGDAYC DRISASGRGG GDEGRVVEWE LGLPGGHHLV SLSQTLIPPE LASAFRINPE PARTLLDVHR ASQHTVSNLR RAAPSPAAAA ALRYFHPFPS
101: PAADDDDDDD DDDEDHPVAA ESFAPPLENS NDDQSVRTLK RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRMQ
201: GLSNEGPSSS DHLFTSTPVP QSLREQQLPM SVPYAMPTMI PMPVFGMAHP HAHGNPMVPV NNNQYYRLLS SVNNMNPIS
101: PAADDDDDDD DDDEDHPVAA ESFAPPLENS NDDQSVRTLK RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRMQ
201: GLSNEGPSSS DHLFTSTPVP QSLREQQLPM SVPYAMPTMI PMPVFGMAHP HAHGNPMVPV NNNQYYRLLS SVNNMNPIS
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.