Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G46640.3 | Thale cress | nucleus | 62.75 | 57.72 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 40.27 | 52.4 |
| Os01t0971800-00 | Rice | nucleus | 41.28 | 51.68 |
| Solyc06g005680.2.1 | Tomato | nucleus | 44.97 | 50.38 |
| Zm00001d011785_P001 | Maize | nucleus | 36.58 | 49.77 |
| PGSC0003DMT400005490 | Potato | nucleus | 50.34 | 49.67 |
| KRH24748 | Soybean | nucleus | 48.66 | 47.39 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 49.33 | 47.27 |
| GSMUA_Achr10P... | Banana | nucleus | 43.62 | 46.59 |
| Zm00001d041960_P001 | Maize | nucleus | 40.27 | 46.51 |
| PGSC0003DMT400077979 | Potato | nucleus | 47.99 | 45.54 |
| KRH29751 | Soybean | nucleus | 48.99 | 45.2 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.97 | 43.93 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 40.27 | 43.8 |
| Solyc06g076350.2.1 | Tomato | nucleus | 47.32 | 43.79 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 40.27 | 42.7 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 40.6 | 42.16 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 40.27 | 42.11 |
| AT2G40970.1 | Thale cress | nucleus | 30.54 | 36.69 |
| AT5G05090.1 | Thale cress | nucleus | 30.87 | 34.59 |
| AT3G10760.1 | Thale cress | nucleus | 32.89 | 29.25 |
| AT5G49240.1 | Thale cress | cytoskeleton, cytosol, nucleus | 14.09 | 14.38 |
| AT2G01760.2 | Thale cress | nucleus | 19.13 | 13.9 |
| AT2G25180.1 | Thale cress | nucleus | 23.49 | 11.74 |
| AT3G62670.1 | Thale cress | nucleus | 15.44 | 10.8 |
| AT1G67710.1 | Thale cress | nucleus | 18.79 | 10.75 |
| AT3G16857.2 | Thale cress | nucleus | 23.15 | 10.0 |
| AT4G31920.1 | Thale cress | nucleus | 18.46 | 9.96 |
| AT5G58080.1 | Thale cress | nucleus | 20.81 | 9.76 |
| AT2G27070.1 | Thale cress | nucleus | 18.46 | 9.62 |
| AT5G07210.1 | Thale cress | nucleus | 19.8 | 9.5 |
| AT1G49190.2 | Thale cress | nucleus | 15.77 | 7.56 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | EntrezGene:836076 | ProteinID:AED97207.1 | EMBL:AK117348 | ProteinID:ANM69715.1 |
| ArrayExpress:AT5G59570 | EnsemblPlantsGene:AT5G59570 | RefSeq:AT5G59570 | TAIR:AT5G59570 | RefSeq:AT5G59570-TAIR-G | EnsemblPlants:AT5G59570.2 |
| EMBL:AY088089 | ProteinID:BAA97491.1 | ProteinID:BAE16278.1 | EMBL:BT026065 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009909 | GO:GO:0009987 | GO:GO:0048511 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | RefSeq:NP_001331374.1 | RefSeq:NP_200765.1 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 |
| PANTHER:PTHR31442:SF12 | UniProt:Q9LTH4 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00000AC1E7 |
| SEG:seg | : | : | : | : | : |
Description
BOATranscription factor BOA [Source:UniProtKB/Swiss-Prot;Acc:Q9LTH4]
Coordinates
chr5:+:24003888..24007844
Molecular Weight (calculated)
32368.8 Da
IEP (calculated)
4.606
GRAVY (calculated)
-0.637
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKEVMVSDY GDDDGEDAGG GDEYRIPEWE IGLPNGDDLT PLSQYLVPSI LALAFSMIPE RSRTIHDVNR ASQITLSSLR SSTNASSVME EVVDRVESSV
101: PGSDPKKQKK SDGGEAAAVE DSTAEEGDSG PEDASGKTSK RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRIQ
201: GLTTEEDPYS SSDQLFSSTP VPPQSFQDGG GSNGKLGVPV PVPSMVPIPG YGNQMGMQGY YQQYSNHGNE SNQYMMQQNK FGTMVTYPSV GGGDVNDK
101: PGSDPKKQKK SDGGEAAAVE DSTAEEGDSG PEDASGKTSK RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRIQ
201: GLTTEEDPYS SSDQLFSSTP VPPQSFQDGG GSNGKLGVPV PVPSMVPIPG YGNQMGMQGY YQQYSNHGNE SNQYMMQQNK FGTMVTYPSV GGGDVNDK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.