Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009087.1-P | Field mustard | nucleus | 80.45 | 80.15 |
| CDX98816 | Canola | nucleus | 78.2 | 79.69 |
| Solyc10g080960.1.1 | Tomato | nucleus | 59.77 | 59.77 |
| PGSC0003DMT400072213 | Potato | nucleus | 59.02 | 59.02 |
| Solyc10g078310.1.1 | Tomato | nucleus | 63.16 | 57.93 |
| PGSC0003DMT400018485 | Potato | nucleus | 63.16 | 57.93 |
| AT2G40970.1 | Thale cress | nucleus | 49.62 | 53.23 |
| AT3G10760.1 | Thale cress | nucleus | 66.54 | 52.84 |
| GSMUA_Achr11P... | Banana | nucleus | 55.26 | 48.51 |
| GSMUA_Achr8P05880_001 | Banana | nucleus | 55.26 | 46.67 |
| GSMUA_Achr5P27500_001 | Banana | nucleus | 47.37 | 44.37 |
| Zm00001d010280_P001 | Maize | nucleus | 48.12 | 42.81 |
| HORVU1Hr1G064950.1 | Barley | nucleus | 48.5 | 42.3 |
| TraesCS1D01G257700.1 | Wheat | nucleus | 48.5 | 41.75 |
| TraesCS1B01G268900.1 | Wheat | nucleus | 48.12 | 41.56 |
| Zm00001d038191_P001 | Maize | nucleus | 48.5 | 41.35 |
| TraesCS1A01G258400.1 | Wheat | nucleus | 48.12 | 41.03 |
| Os05t0412000-00 | Rice | nucleus | 50.38 | 32.45 |
| AT5G59570.2 | Thale cress | nucleus | 34.59 | 30.87 |
| AT3G46640.3 | Thale cress | nucleus | 36.09 | 29.63 |
| AT2G01760.2 | Thale cress | nucleus | 19.92 | 12.93 |
| AT5G49240.1 | Thale cress | cytoskeleton, cytosol, nucleus | 13.91 | 12.67 |
| AT4G31920.1 | Thale cress | nucleus | 22.18 | 10.69 |
| AT2G25180.1 | Thale cress | nucleus | 23.68 | 10.57 |
| AT3G62670.1 | Thale cress | nucleus | 16.17 | 10.09 |
| AT1G67710.1 | Thale cress | nucleus | 18.8 | 9.6 |
| AT5G58080.1 | Thale cress | nucleus | 22.56 | 9.45 |
| AT3G16857.2 | Thale cress | nucleus | 22.56 | 8.7 |
| AT2G27070.1 | Thale cress | nucleus | 17.67 | 8.22 |
| AT5G07210.1 | Thale cress | nucleus | 18.8 | 8.05 |
| AT1G49190.2 | Thale cress | nucleus | 13.53 | 5.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | EntrezGene:830391 | ProteinID:AED90827.1 | ArrayExpress:AT5G05090 | EnsemblPlantsGene:AT5G05090 |
| RefSeq:AT5G05090 | TAIR:AT5G05090 | RefSeq:AT5G05090-TAIR-G | EnsemblPlants:AT5G05090.1 | TAIR:AT5G05090.1 | EMBL:AY093188 |
| Unigene:At.33034 | ProteinID:BAB11531.1 | EMBL:BT006289 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_196128.1 |
| PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51294 | PANTHER:PTHR31442 |
| PANTHER:PTHR31442:SF1 | UniProt:Q9FF65 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00000A1545 |
| SEG:seg | : | : | : | : | : |
Description
At5g05090 [Source:UniProtKB/TrEMBL;Acc:Q9FF65]
Coordinates
chr5:+:1503232..1504494
Molecular Weight (calculated)
29442.7 Da
IEP (calculated)
8.080
GRAVY (calculated)
-0.544
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MREEDSNWFA KWEEELPSPE ELIPLSQSLI TPDLAIAFDL HRNNNSNSGQ PLPQTTPPQP NSSAEIAGDS TGDEPARTLK RPRLVWTPQL HKRFVDAVAH
101: LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMK SGGGGGGSGD SDHLFASSPV PPHFLHPTSR QSSDLFIPSF VPISTQQQHI AAPPSQFLHR
201: QISAVNFTSP TKATDQAMFL ARQQSELQQP VFKPSSLHLH SQVANYTQDL KSGAKTVLTL FPTRDD
101: LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMK SGGGGGGSGD SDHLFASSPV PPHFLHPTSR QSSDLFIPSF VPISTQQQHI AAPPSQFLHR
201: QISAVNFTSP TKATDQAMFL ARQQSELQQP VFKPSSLHLH SQVANYTQDL KSGAKTVLTL FPTRDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.