Factsheet for Os05t0412000-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G257700.1	Wheat	nucleus	61.99	82.85
HORVU1Hr1G064950.1	Barley	nucleus	60.53	81.97
TraesCS1B01G268900.1	Wheat	nucleus	61.02	81.82
TraesCS1A01G258400.1	Wheat	nucleus	61.5	81.41
Zm00001d038191_P001	Maize	nucleus	59.32	78.53
Zm00001d010280_P001	Maize	nucleus	55.21	76.25
GSMUA_Achr11P...	Banana	nucleus	40.44	55.12
GSMUA_Achr8P05880_001	Banana	nucleus	41.65	54.6
Solyc10g080960.1.1	Tomato	nucleus	34.62	53.76
PGSC0003DMT400072213	Potato	nucleus	34.62	53.76
Bra009087.1-P	Field mustard	nucleus	34.38	53.18
VIT_08s0040g00900.t01	Wine grape	nucleus	38.98	52.61
GSMUA_Achr5P27500_001	Banana	nucleus	35.84	52.11
Bra005837.1-P	Field mustard	nucleus	31.48	51.79
Solyc10g078310.1.1	Tomato	nucleus	36.08	51.38
KRH71692	Soybean	nucleus	32.2	51.15
PGSC0003DMT400018485	Potato	nucleus	35.84	51.03
Bra004593.1-P	Field mustard	nucleus	30.27	50.61
AT5G05090.1	Thale cress	nucleus	32.45	50.38
Bra029866.1-P	Field mustard	nucleus	34.87	50.35
AT2G40970.1	Thale cress	nucleus	29.78	49.6
KRG95053	Soybean	nucleus	36.32	48.08
KRH66705	Soybean	nucleus	36.32	46.58
Bra034144.1-P	Field mustard	nucleus	36.08	45.85
AT3G10760.1	Thale cress	nucleus	36.56	45.07
CDY36273	Canola	mitochondrion	23.73	41.0
Os01t0844900-01	Rice	nucleus	20.34	38.36
Os01t0971800-00	Rice	nucleus	22.03	38.24
Os10t0463400-01	Rice	nucleus	10.9	13.2
Os01t0904700-01	Rice	nucleus	15.01	10.65
Os06t0183100-01	Rice	nucleus	17.43	10.34
Os02t0796500-01	Rice	nucleus	17.19	10.32
Os02t0182100-01	Rice	nucleus	15.5	10.22
Os03t0224200-01	Rice	nucleus	16.95	10.13
Os06t0647200-02	Rice	nucleus	14.04	8.41

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	UniProt:A0A0P0WM79	ProteinID:BAS94007.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants
EnsemblPlantsGene:Os05g0412000	EnsemblPlants:Os05t0412000-00	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31442	PANTHER:PTHR31442:SF1
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000393A9C8	SEG:seg	:

Description

Similar to Homeodomain-related. (Os05t0412000-00)

Coordinates

chr5:-:20154610..20156002

Molecular Weight (calculated)

41886.1 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.187

Length

413 amino acids

Sequence
(BLAST)

001: MREEEEPSWF ARWEEQLPAP DELMPLSQSL ITPDLAVAFD IPTHGGGGGG GVGGGVVGGD GVGGGGGGGG GGGGGVGAGE MNGGASSAAG SSGGGGGGGG
101: GDEPARTLKR PRLVWTPQLH KRFVDAVAHL GIKNAVPKTI MQLMSVDGLT RENVASHLQK YRLYLKRMQG VGNGGGGGGG GGAGAGGSHS SGSGTDAATE
201: HLFATGPVPF LPPGRAPAGG DPYPPFAPMG GHHHHPPQIG HFHHHPAARP LGHYGSGPGA GFDHGFLSRA VAGGGPPVGP PGMHHRMVGP AAGMAMMAPS
301: PFAEELELGS RGDGHRASVL GYIQFVRFIS PSASSPPDRH RNRASPIASS SPKNSWELAL HRSCLNPIRI APKTLAPPHL LLLFLCCCCY LSLLFQFSPP
401: PPPPLLLFLS LMT

Best Arabidopsis Sequence Match ( AT3G10760.1 )
(BLAST)

001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SG82]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.