Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g080960.1.1 | Tomato | nucleus | 93.23 | 93.23 |
| PGSC0003DMT400018485 | Potato | nucleus | 80.08 | 73.45 |
| CDX98816 | Canola | nucleus | 59.4 | 60.54 |
| Bra009087.1-P | Field mustard | nucleus | 60.15 | 59.93 |
| AT5G05090.1 | Thale cress | nucleus | 59.02 | 59.02 |
| GSMUA_Achr11P... | Banana | nucleus | 58.27 | 51.16 |
| GSMUA_Achr8P05880_001 | Banana | nucleus | 59.02 | 49.84 |
| GSMUA_Achr5P27500_001 | Banana | nucleus | 50.75 | 47.54 |
| HORVU1Hr1G064950.1 | Barley | nucleus | 53.01 | 46.23 |
| Zm00001d010280_P001 | Maize | nucleus | 51.13 | 45.48 |
| TraesCS1B01G268900.1 | Wheat | nucleus | 52.26 | 45.13 |
| TraesCS1D01G257700.1 | Wheat | nucleus | 52.26 | 44.98 |
| TraesCS1A01G258400.1 | Wheat | nucleus | 52.26 | 44.55 |
| Zm00001d038191_P001 | Maize | nucleus | 51.5 | 43.91 |
| Os05t0412000-00 | Rice | nucleus | 53.76 | 34.62 |
| PGSC0003DMT400005490 | Potato | nucleus | 38.72 | 34.11 |
| PGSC0003DMT400077979 | Potato | nucleus | 34.59 | 29.3 |
| PGSC0003DMT400060506 | Potato | nucleus | 28.57 | 11.46 |
| PGSC0003DMT400065835 | Potato | nucleus | 27.82 | 10.96 |
| PGSC0003DMT400075907 | Potato | nucleus | 24.81 | 10.11 |
| PGSC0003DMT400031260 | Potato | nucleus | 21.8 | 10.0 |
| PGSC0003DMT400090747 | Potato | nucleus | 20.68 | 9.84 |
| PGSC0003DMT400020233 | Potato | nucleus | 25.94 | 9.76 |
| PGSC0003DMT400035788 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 7.89 | 9.68 |
| PGSC0003DMT400008290 | Potato | nucleus | 27.44 | 9.44 |
| PGSC0003DMT400089008 | Potato | nucleus | 18.42 | 8.4 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102585758 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1CPV3 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 |
| EnsemblPlantsGene:PGSC0003DMG400028100 | PGSC:PGSC0003DMG400028100 | EnsemblPlants:PGSC0003DMT400072213 | PFscan:PS51294 | PANTHER:PTHR31442 | PANTHER:PTHR31442:SF1 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000295CEFA | RefSeq:XP_006339253.1 | SEG:seg |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028100]
Coordinates
chr10:-:56974143..56975419
Molecular Weight (calculated)
29150.6 Da
IEP (calculated)
7.885
GRAVY (calculated)
-0.420
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MREEDSNWFA KWEEELPSPK ELMPLSQTLI TPNLAIAFDI QNPNTPNPKI SPLVHTLSSA EFESNSAELG GMAGSSGVGD EPARTQKRPR LVWTPQLHKR
101: FVDAVAQLGI KNAVPKTIMQ LMSVDGLTRE NVASHLQKYR LYLKRMQGFC NSGSVYGAGV DPATDHLFAS SPVPAHFLHP GRGNSDHYMP FVPVAAVIGH
201: APQLQQQYRH FGSPPNGQFE VPFLPRQSQQ SVQRMGTSVH SSSSVLESAT AANGRKVLTL FPNGDD
101: FVDAVAQLGI KNAVPKTIMQ LMSVDGLTRE NVASHLQKYR LYLKRMQGFC NSGSVYGAGV DPATDHLFAS SPVPAHFLHP GRGNSDHYMP FVPVAAVIGH
201: APQLQQQYRH FGSPPNGQFE VPFLPRQSQQ SVQRMGTSVH SSSSVLESAT AANGRKVLTL FPNGDD
001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SG82]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.