Factsheet for PGSC0003DMT400077979

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076350.2.1	Tomato	nucleus	94.27	91.93
PGSC0003DMT400005490	Potato	nucleus	59.87	62.25
VIT_06s0004g05120.t01	Wine grape	nucleus	54.78	55.31
GSMUA_Achr5P07060_001	Banana	nucleus	39.81	54.59
KRH24748	Soybean	nucleus	49.36	50.65
Os01t0971800-00	Rice	nucleus	37.9	50.0
GSMUA_Achr10P...	Banana	nucleus	44.27	49.82
Zm00001d011785_P001	Maize	nucleus	34.71	49.77
CDX82988	Canola	nucleus	40.45	49.03
CDX99104	Canola	nucleus	45.22	48.97
CDY61256	Canola	nucleus	42.36	48.54
CDX68392	Canola	nucleus	40.45	48.47
Zm00001d041960_P001	Maize	nucleus	39.81	48.45
Bra018204.1-P	Field mustard	nucleus	46.82	48.36
KRH29751	Soybean	nucleus	49.36	47.99
AT5G59570.2	Thale cress	nucleus	45.54	47.99
GSMUA_AchrUn_...	Banana	nucleus	46.5	47.87
Bra033809.1-P	Field mustard	nucleus	42.36	46.67
HORVU3Hr1G114970.1	Barley	nucleus	39.49	45.26
TraesCS3D01G531900.1	Wheat	nucleus	40.13	44.84
TraesCS3B01G594300.1	Wheat	nucleus	40.76	44.6
TraesCS3A01G526600.1	Wheat	nucleus	40.45	44.56
AT3G46640.3	Thale cress	nucleus	44.27	42.9
PGSC0003DMT400072213	Potato	nucleus	29.3	34.59
PGSC0003DMT400018485	Potato	nucleus	29.94	32.41
PGSC0003DMT400090747	Potato	nucleus	21.97	12.34
PGSC0003DMT400075907	Potato	nucleus	24.52	11.79
PGSC0003DMT400035788	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	7.64	11.06
PGSC0003DMT400060506	Potato	nucleus	23.25	11.01
PGSC0003DMT400020233	Potato	nucleus	24.2	10.75
PGSC0003DMT400031260	Potato	nucleus	19.75	10.69
PGSC0003DMT400008290	Potato	nucleus	25.48	10.35
PGSC0003DMT400089008	Potato	nucleus	18.79	10.12
PGSC0003DMT400065835	Potato	nucleus	21.66	10.07

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102600588	MapMan:27.1.6.3.1	EMBL:AB219071	ProteinID:BAE16282	ProteinID:BAE16282.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010468	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M1CZ61	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400030328
PGSC:PGSC0003DMG400030328	EnsemblPlants:PGSC0003DMT400077979	PFscan:PS51294	PANTHER:PTHR31442	PANTHER:PTHR31442:SF12	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000296BC4F	RefSeq:XP_006350785.1	RefSeq:XP_006350786.1	SEG:seg

Description

StPCL1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030328]

Coordinates

chr6:+:56777855..56780854

Molecular Weight (calculated)

35328.5 Da

IEP (calculated)

6.086

GRAVY (calculated)

-0.760

Length

314 amino acids

Sequence
(BLAST)

001: MGEEVNLTDY EYSGGNDDRL LWEVGLPDVD DLTPLTLQLI PSELAAAFRI SPELSKTMTD VNRASQNTFS SLQRWHSQDM ASMNNSYFKP FSYERTREET
101: VTERDETDLI REGSDPRKLR RVESGGTEEA DSSLCNENFA DDSSAKTPKR SRLVWTPQLH KRFIEVVAHL GIKGAVPKTI MQLMNVEGLT RENVASHLQK
201: YRLYTKRMQP NEGPSSSDHL FTSTPATESM RESSEGGHLR NTNGHMATPT LMPYQPQMVP MPMMGMPNGG HVGMPVGYGG GPPLGFHHHY NMVQQRDWSG
301: NNFGYYHPVA SNDK

Best Arabidopsis Sequence Match ( AT3G46640.1 )
(BLAST)

001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN

Arabidopsis Description

PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.