Factsheet for VIT_06s0004g05120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005680.2.1	Tomato	nucleus	57.56	67.29
KRH24748	Soybean	nucleus	64.95	66.01
PGSC0003DMT400005490	Potato	nucleus	62.38	64.24
GSMUA_Achr5P07060_001	Banana	nucleus	47.27	64.19
KRH29751	Soybean	nucleus	65.92	63.47
Os01t0971800-00	Rice	nucleus	43.09	56.3
Zm00001d011785_P001	Maize	nucleus	39.55	56.16
GSMUA_Achr10P...	Banana	nucleus	49.52	55.2
PGSC0003DMT400077979	Potato	nucleus	55.31	54.78
CDY61256	Canola	nucleus	47.91	54.38
Zm00001d041960_P001	Maize	nucleus	45.02	54.26
Solyc06g076350.2.1	Tomato	nucleus	55.95	54.04
CDX99104	Canola	nucleus	49.84	53.45
Bra018204.1-P	Field mustard	nucleus	52.09	53.29
CDX82988	Canola	nucleus	44.05	52.9
GSMUA_AchrUn_...	Banana	nucleus	51.77	52.79
CDX68392	Canola	nucleus	44.37	52.67
HORVU3Hr1G114970.1	Barley	nucleus	46.3	52.55
TraesCS3B01G594300.1	Wheat	nucleus	46.95	50.87
TraesCS3D01G531900.1	Wheat	nucleus	45.66	50.53
Bra033809.1-P	Field mustard	nucleus	46.3	50.53
TraesCS3A01G526600.1	Wheat	nucleus	45.98	50.18
AT5G59570.2	Thale cress	nucleus	47.27	49.33
AT3G46640.3	Thale cress	nucleus	50.16	48.15
VIT_08s0040g00900.t01	Wine grape	nucleus	37.62	38.24
VIT_17s0000g10110.t01	Wine grape	nucleus	19.29	13.27
VIT_05s0077g01480.t01	Wine grape	nucleus	26.69	12.89
VIT_07s0005g01010.t01	Wine grape	nucleus	18.97	11.05
VIT_01s0011g05830.t01	Wine grape	nucleus	24.76	11.02
VIT_17s0000g10100.t01	Wine grape	nucleus	19.94	10.88
VIT_04s0008g05900.t01	Wine grape	nucleus	23.79	10.68
VIT_11s0206g00060.t01	Wine grape	nucleus	23.79	10.68
VIT_01s0010g02230.t01	Wine grape	nucleus	19.94	10.44
VIT_11s0052g01160.t01	Wine grape	cytosol	7.07	10.19
VIT_16s0100g00430.t01	Wine grape	nucleus	14.79	9.26
VIT_16s0100g00420.t01	Wine grape	nucleus	17.36	9.12

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100253567	wikigene:100253567	MapMan:27.1.6.3.1	EMBL:AM455828	ProteinID:CAN81044
ProteinID:CAN81044.1	ProteinID:CCB43549	ProteinID:CCB43549.1	UniProt:F6GUZ0	EMBL:FN594951	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100253567
wikigene:LOC100253567	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31442
PANTHER:PTHR31442:SF12	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGR:TC60226	TIGRFAMs:TIGR01557	UniParc:UPI00015C81C8
ArrayExpress:VIT_06s0004g05120	EnsemblPlantsGene:VIT_06s0004g05120	EnsemblPlants:VIT_06s0004g05120.t01	unigene:Vvi.19267	RefSeq:XP_002283159	RefSeq:XP_002283159.1
RefSeq:XP_010650997.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:6067600..6071282

Molecular Weight (calculated)

34133.9 Da

IEP (calculated)

6.106

GRAVY (calculated)

-0.721

Length

311 amino acids

Sequence
(BLAST)

001: MGEEVRMSDI NGGDGGDDER VLEWEAGLPA ADDLTPLSQP LIPPELASAF SITPEPCRTL LEVNRASQST FSTIRGQSHS FSSNNFKSFN EERNREPAVV
101: EPEETGDRDG SGSESRKVRK VDCAEEADSA MRTENSNDDP SARTLKRPRL VWTPQLHKRF VDVVGHLGIK NAVPKTIMQL MNVEGLTREN VASHLQKYRL
201: YLKRMQGLSN EGPSSSDHLF ASTPVPQSLH ESGGSVHGNG HGNGHMSVPI PMPYGQTMMH MPVLGVSHGH GQMGMSGPGG YHGYESHHPY NMLQQRDWSV
301: VSYPNVGPND Q

Best Arabidopsis Sequence Match ( AT3G46640.1 )
(BLAST)

001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN

Arabidopsis Description

PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.