Factsheet for VIT_16s0100g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00430.t01	Wine grape	nucleus	53.38	63.58
PGSC0003DMT400035788	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	12.67	34.56
VIT_11s0052g01160.t01	Wine grape	cytosol	10.64	29.17
Solyc07g019550.1.1	Tomato	nucleus	18.07	29.16
Solyc11g072330.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.54	27.88
Solyc03g026250.1.1	Tomato	nucleus	13.85	24.62
VIT_05s0077g01480.t01	Wine grape	nucleus	23.14	21.27
VIT_17s0000g10110.t01	Wine grape	nucleus	15.2	19.91
VIT_07s0005g01010.t01	Wine grape	nucleus	17.57	19.48
VIT_17s0000g10100.t01	Wine grape	nucleus	18.75	19.47
VIT_08s0040g00900.t01	Wine grape	nucleus	9.97	19.28
VIT_01s0010g02230.t01	Wine grape	nucleus	19.26	19.19
VIT_11s0206g00060.t01	Wine grape	nucleus	22.3	19.05
VIT_01s0011g05830.t01	Wine grape	nucleus	22.3	18.88
CDX98997	Canola	nucleus	19.09	18.86
AT5G07210.1	Thale cress	nucleus	19.76	18.84
AT2G27070.1	Thale cress	nucleus	18.07	18.71
KRH09142	Soybean	nucleus	20.95	18.54
CDX70016	Canola	nucleus	18.41	18.17
VIT_04s0008g05900.t01	Wine grape	nucleus	20.78	17.75
KRH38615	Soybean	nucleus	15.71	17.61
VIT_06s0004g05120.t01	Wine grape	nucleus	9.12	17.36
CDX81041	Canola	nucleus	16.55	17.31
CDX78284	Canola	nucleus	16.55	17.25
CDY67763	Canola	nucleus	16.72	16.67
Bra005928.1-P	Field mustard	nucleus	19.76	15.41
Bra009284.1-P	Field mustard	nucleus	19.76	15.14
Bra028705.1-P	Field mustard	nucleus	17.91	13.82
CDY14053	Canola	nucleus	16.55	13.1
CDX86925	Canola	nucleus	14.53	12.7
CDY30695	Canola	nucleus	13.34	10.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	EMBL:AM425857	ProteinID:CAN73375
ProteinID:CAN73375.1	ProteinID:CBI31843	ProteinID:CBI31843.3	InterPro:CheY-like_superfamily	UniProt:D7TMX0	EMBL:FN596000
GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF19	InterPro:SANT/Myb
SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI00015CCC60
ArrayExpress:VIT_16s0100g00420	EnsemblPlantsGene:VIT_16s0100g00420	EnsemblPlants:VIT_16s0100g00420.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr16:+:15857462..15861283

Molecular Weight (calculated)

64599.1 Da

IEP (calculated)

5.921

GRAVY (calculated)

-0.461

Length

592 amino acids

Sequence
(BLAST)

001: MDNEINSPNQ QSHKTITSAA GVNVMVVDDD VICLSIVAGI LRTRRYQVVT VKNPLDALAT LRSGSDFFHL VVTDVHMPEL DGFEFQKKVQ EEFQLPVVMM
101: SADDKESSML KGLEAGAAFY IVKPVNYDDL KNIWQYAVGP RKDNSVDMQD VGPAPEEESP VEKTPDDPVD IESVSSVNEV NQSKRDPKKK ASKRVIEDSG
201: KENSDAVSPK RTKVVWTSAL HTRFLEAVRK IGLERAVPKR ILELMNMPGL TRENVASHLQ KYRIFLRRVA EASNSTGSST GKRIAERTLR SSFATGHPSL
301: LISALQQGFP QLLNQQLVGS LLQPGFPGNI QINDPTLRGA IFPNQQASSS NPRPQLGHGQ GHSMNNQAYL QQQPFGNTNA LPEANGGVMN GANPMQMNQQ
401: QTQARSELVP NAMSNNNFTV FEGSGNIHGV QNMESFNNSH LPPNFDCNNN IAGSGPMGLS NGFNGNYGSI AGNINGNLAL SESVNSGYYA QGAYSSVGLR
501: STNQPPTRFS NITQQNNNPM LLPSLSLLQQ NDLGNGGGDN SYLLDHLMNT TAPMESVSPL QFAESELDEL FQGHLNNLHN NEVLRLVAFL VA

Best Arabidopsis Sequence Match ( AT5G07210.2 )
(BLAST)

001: MASAQSFYNQ SSVLKINVMV VDDDHVFLDI MSRMLQHSKY RVIAVDDPKK ALSTLKIQRD NIDLIITDYY MPGMNGLQLK KQITQEFGNL PVLVMSSDTN
101: KEEESLSCGA MGFIPKPIHP TDLTKIYQFA LSNKRNGKST LSTEQNHKDA DVSVPQQITL VPEQADVLKT KRKNCSFKSD SRTVNSTNGS CVSTDGSRKN
201: RKRKPNGGPS DDGESMSQPA KKKKIQWTDS LHDLFLQAIR HIGLDKAVPK KILAFMSVPY LTRENVASHL QKYRIFLRRV AEQGLYSMLS DRGIDSMFRQ
301: THIKEPYFNY YTPSTSWYDT RLNNRSFYSK PVHGFGQSKL LSTTREPVCF NQMPYNYMNR SSTYEPHRIG SGSNLTLPIQ SNLSFPNQPS QNEERRSFFE
401: PPVMANKIAQ TSQVLGFGQL GPSAISGHNF NNNMTSRYGS LIPSQPGPSH FSYGMQSFLN NENVTYNPQP PANATTQPNL DELPQLENLN LYNDFGNTSE
501: LPYNISNFQF DDNKHQQGEA DPTKFELPAA KFSTELNHED DGDWTFVNIN QGQSNGETSN TIASPETNTP ILNINHNQNQ GQDVPEFNDW SFLDPQELVD
601: DDFMNSLFNN DMN

Arabidopsis Description

ARR21response regulator 21 [Source:TAIR;Acc:AT5G07210]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.