Factsheet for VIT_16s0100g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00420.t01	Wine grape	nucleus	63.58	53.38
Solyc11g072330.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	14.29	21.52
Solyc07g019550.1.1	Tomato	nucleus	14.89	20.16
PGSC0003DMT400035788	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	8.45	19.35
KRH38615	Soybean	nucleus	18.31	17.23
Solyc03g026250.1.1	Tomato	nucleus	11.07	16.52
VIT_08s0040g00900.t01	Wine grape	nucleus	10.06	16.34
VIT_17s0000g10110.t01	Wine grape	nucleus	14.69	16.15
VIT_06s0004g05120.t01	Wine grape	nucleus	9.26	14.79
VIT_05s0077g01480.t01	Wine grape	nucleus	19.11	14.75
VIT_01s0011g05830.t01	Wine grape	nucleus	20.32	14.45
VIT_11s0052g01160.t01	Wine grape	cytosol	6.24	14.35
AT2G27070.1	Thale cress	nucleus	16.3	14.16
VIT_11s0206g00060.t01	Wine grape	nucleus	19.52	14.0
VIT_07s0005g01010.t01	Wine grape	nucleus	14.89	13.86
AT5G07210.1	Thale cress	nucleus	17.3	13.85
CDX81041	Canola	nucleus	15.49	13.6
CDX78284	Canola	nucleus	15.49	13.56
VIT_17s0000g10100.t01	Wine grape	nucleus	15.49	13.51
KRH09142	Soybean	nucleus	18.11	13.45
CDX98997	Canola	nucleus	16.1	13.36
CDX70016	Canola	nucleus	16.1	13.33
VIT_01s0010g02230.t01	Wine grape	nucleus	15.69	13.13
CDY67763	Canola	nucleus	14.69	12.29
VIT_04s0008g05900.t01	Wine grape	nucleus	16.9	12.12
Bra009284.1-P	Field mustard	nucleus	17.71	11.38
Bra005928.1-P	Field mustard	nucleus	17.1	11.2
Bra028705.1-P	Field mustard	nucleus	16.1	10.43
CDY14053	Canola	nucleus	15.29	10.16
CDX86925	Canola	nucleus	13.68	10.04
CDY30695	Canola	nucleus	14.89	9.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	EMBL:AM432245	ProteinID:CAN78184	ProteinID:CAN78184.1
ProteinID:CCB56473	ProteinID:CCB56473.1	InterPro:CheY-like_superfamily	ncoils:Coil	UniProt:F6HP67	EMBL:FN596000
GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF19	SUPFAM:SSF46689	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI000210882B	ArrayExpress:VIT_16s0100g00430	EnsemblPlantsGene:VIT_16s0100g00430	EnsemblPlants:VIT_16s0100g00430.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:+:15871280..15873030

Molecular Weight (calculated)

54422.3 Da

IEP (calculated)

9.493

GRAVY (calculated)

-0.561

Length

497 amino acids

Sequence
(BLAST)

001: MSADDKESSM LRGLEAGAAF YIVKPVNYDD LKNLWQYAVG PKKGKSHIVM QEIERTQGAS QLEKTSNNEV ESLMNEEKHN KRDSKRKTLK KANEGNGKEK
101: SETVAPKKAK VIWTSALHNR FLEAARKIGL ERAVPKRILE IMNVPGLTRE NVASHLQKYR IFLKRVMETS SSGTITGKNI SERTLRSSFA TGHPSLMVNA
201: LQRGFPQFLD HQQVGASQLQ PRFLGNLPIA NASSLSSTIF PNQQASSGNP IPQLGYGQAH SMNKHAYLQQ PTFGNTKALY QANGAGMNAT NPMQMYQQKT
301: QARSELVPNA MSNNTFTAFG VSDPNNIHGI QNNGVNNSDM TLNIAGSGQI GFAGGGILNG FNGGYGLFDG NNGITHASLR NVNSGYYAEG ACSSAGFGGT
401: NQIPPRFSNV IQQENNPMLL PQQNNLGEGG EDNSYLLDQL RNNTAPMENT SISQFAENDL DEIFGQNQPK NPSYNEVLLK LINYFLGCTG YIFFIPI

Best Arabidopsis Sequence Match ( AT3G16857.3 )
(BLAST)

001: MALSLLRKNK HGFDIVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE
101: ETGERQQQQH RGGGGGAAVS GGEDAVDDNS SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL
201: MNVPGLTREN VASHLQKYRI YLRRLGGVSQ HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER
301: SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS
401: NRISERSGFS GRNNIPESSR VLPTSYTNLT TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN
501: IGIAFDSHQD SESAAFSASE AYSSSSMSRH NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQEG
601: IAPVDGEFDF DAYSIDNIPV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.