Factsheet for VIT_04s0008g05900.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61694	Soybean	nucleus	53.68	56.71
KRH05273	Soybean	nucleus	53.25	55.32
KRH15779	Soybean	nucleus	52.38	54.02
KRH52361	Soybean	nucleus	54.11	53.88
VIT_11s0206g00060.t01	Wine grape	nucleus	52.67	52.67
VIT_11s0052g01160.t01	Wine grape	cytosol	14.86	47.69
Solyc07g005140.2.1	Tomato	nucleus	44.73	46.62
PGSC0003DMT400020233	Potato	nucleus	46.46	45.54
GSMUA_Achr10P...	Banana	nucleus	42.86	45.48
Solyc12g010330.1.1	Tomato	nucleus	46.18	45.2
GSMUA_Achr2P05130_001	Banana	nucleus	41.85	45.03
GSMUA_Achr11P...	Banana	nucleus	40.98	44.94
PGSC0003DMT400008290	Potato	nucleus	44.88	40.23
VIT_05s0077g01480.t01	Wine grape	nucleus	31.46	33.85
VIT_01s0010g02230.t01	Wine grape	nucleus	25.97	30.3
VIT_17s0000g10100.t01	Wine grape	nucleus	24.82	30.18
VIT_07s0005g01010.t01	Wine grape	nucleus	23.23	30.15
VIT_17s0000g10110.t01	Wine grape	nucleus	19.48	29.87
VIT_01s0011g05830.t01	Wine grape	nucleus	27.99	27.75
Os06t0647200-02	Rice	nucleus	26.98	27.1
VIT_06s0004g05120.t01	Wine grape	nucleus	10.68	23.79
VIT_08s0040g00900.t01	Wine grape	nucleus	10.1	22.88
VIT_16s0100g00420.t01	Wine grape	nucleus	17.75	20.78
VIT_16s0100g00430.t01	Wine grape	nucleus	12.12	16.9

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250889	wikigene:100250889	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300
EMBL:AM458594	ProteinID:CAN81109	ProteinID:CAN81109.1	ProteinID:CCB46828	ProteinID:CCB46828.1	InterPro:CheY-like_superfamily
UniProt:F6H3J3	EMBL:FN595231	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930
EntrezGene:LOC100250889	wikigene:LOC100250889	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249
PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF7	InterPro:Response_reg_B-typ_pln
InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557
UniParc:UPI0001983162	ArrayExpress:VIT_04s0008g05900	EnsemblPlantsGene:VIT_04s0008g05900	EnsemblPlants:VIT_04s0008g05900.t01	unigene:Vvi.4583	RefSeq:XP_002282928
RefSeq:XP_002282928.1	SEG:seg	:	:	:	:

Description

Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:F6H3J3]

Coordinates

chr4:-:5599594..5606498

Molecular Weight (calculated)

76247.3 Da

IEP (calculated)

6.382

GRAVY (calculated)

-0.547

Length

693 amino acids

Sequence
(BLAST)

001: MTVEPRVEDP NDQFPIGMRV LAVDDDPTCL RLLDTLLRRC QYHVTTTSQA ITALKMLREN KNQFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSAND
101: DPKLVMKGIT HGACDYLLKP VRIEQLKNIW QHVIRRRRFD PRDQNNSDSR DKRQGPGEGG QGSSEPGNPD HGKLNKKRKD QNEDDDEEND ENGHDNEDPS
201: SQKKPRVVWS VELHRKFVAA VNQLGIDRAV PKKILDLMNV EKLTRENVAS HLQKYRLYLK RISCVANQQA NMVAALGSTD STYLHSLNGL GNFYNLSGSG
301: QLPNSTFRSF PPSGMLGRLN TPSGMGMHCL SSSEMVQLGH LQNSSNPINS GGKFQPVLLP GNQNGIILQG MPMSLELEQL QHNKGIIRVG ELSTTIGDST
401: VFPASSGFPD TKMTSSRSSS SLLVAANSPL MLQGHSQENQ RRGGLRNQNS ATLLNAELPS SFPDHGRCND NWSTAVQPSA IQSSSFPLSD CFKQATLHPS
501: NLRDNISSVT LQSGTNLRDV SCVTSMPPPL PDSRTDLECQ AMTISSNSVK IMNYSPKVWD DHKHKLSHHS SLGCSSANSL IPAPGVMGTF DQGLDLKNTI
601: SDRNMDFNLM GESNFVNPLP MQQNAVEESA SDTALQLKQG CTLGQRKPQS SYASNNVGSL EDLVSAMMKQ EQDKTTLMEG DLGYDAYSLG TCL

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.