Factsheet for VIT_17s0000g10100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g10110.t01	Wine grape	nucleus	58.42	73.67
GSMUA_Achr3P14630_001	Banana	cytosol	37.37	58.36
VIT_01s0010g02230.t01	Wine grape	nucleus	52.81	50.67
Bra004076.1-P	Field mustard	nucleus	41.4	46.37
CDY07410	Canola	nucleus	41.4	46.37
AT1G67710.1	Thale cress	nucleus	42.28	46.26
CDY01838	Canola	nucleus	40.18	45.8
CDX96070	Canola	nucleus	41.05	45.61
CDY28869	Canola	nucleus	40.53	45.56
Bra004245.1-P	Field mustard	nucleus	40.53	45.12
Os01t0904700-01	Rice	nucleus	44.39	43.47
VIT_11s0052g01160.t01	Wine grape	cytosol	16.32	43.06
GSMUA_Achr8P32070_001	Banana	nucleus	40.53	42.39
EES04061	Sorghum	nucleus	42.98	42.31
TraesCS3A01G391600.1	Wheat	nucleus	42.11	41.1
TraesCS3B01G423600.1	Wheat	nucleus	41.93	40.92
Zm00001d012128_P001	Maize	nucleus	41.93	39.64
Zm00001d042463_P001	Maize	nucleus	42.28	39.19
TraesCS3D01G384500.2	Wheat	nucleus	42.11	38.52
VIT_05s0077g01480.t01	Wine grape	nucleus	31.58	27.95
VIT_01s0011g05830.t01	Wine grape	nucleus	30.7	25.04
VIT_04s0008g05900.t01	Wine grape	nucleus	30.18	24.82
VIT_11s0206g00060.t01	Wine grape	nucleus	29.65	24.39
VIT_07s0005g01010.t01	Wine grape	nucleus	22.81	24.34
VIT_06s0004g05120.t01	Wine grape	nucleus	10.88	19.94
VIT_16s0100g00420.t01	Wine grape	nucleus	19.47	18.75
VIT_08s0040g00900.t01	Wine grape	nucleus	9.47	17.65
VIT_16s0100g00430.t01	Wine grape	nucleus	13.51	15.49

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250227	wikigene:100250227	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300
ProteinID:CCB42898	ProteinID:CCB42898.1	InterPro:CheY-like_superfamily	UniProt:F6GSF9	EMBL:FN594950	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR001789	EntrezGene:LOC100250227	wikigene:LOC100250227	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249
PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF27	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI00015C84FD	ArrayExpress:VIT_17s0000g10100	EnsemblPlantsGene:VIT_17s0000g10100
EnsemblPlants:VIT_17s0000g10100.t01	unigene:Vvi.11659	RefSeq:XP_002274673	RefSeq:XP_002274673.1	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:12269629..12273519

Molecular Weight (calculated)

64231.3 Da

IEP (calculated)

4.951

GRAVY (calculated)

-0.518

Length

570 amino acids

Sequence
(BLAST)

001: MESGFCSPRT EAFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCCLAR DALNMLRERK DGFDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE
101: TSRVMKGVQH GACDYLLKPV RMKELKNIWQ HVFRKKIHEG KDVESYECMR EIQMIMSRSD EFDDGHQLNG GELGATRKRK DMENRRHDDQ ELVDPSSSKK
201: ARVVWSIDLH QKFVDAVNQI GFDKVGPKKI LDLMNVPWLT RENVASHLQK YRLYLSRLQK ENELKTSEGM KQQDFTCPAG SLGFQTSTLI HPKDAANCDL
301: KYTGNNMLLI DMGTRICREA DKKGTVSILP MDLKETSTSN FLDSQRANVS SQTILSRPFN YQSSQSNTTS QKWNEAPMEQ FKQPPKQEPE PYALLEDDFS
401: HALQSAPQHL VQVDLQCSAY SVGPGTAVPE RDKPGSVMIT PVRSQSRSNH SQIVNPETSD AISNFKVGMK NQMVGLNCLN DCEPIQQKIF TVGDSSLGSQ
501: VGCAYTESIG LQDIDLLDYY NSELIDELET SYYADLGLNW DNDCDSVQNP FVDQSLFTAR AEASGVCYPG

Best Arabidopsis Sequence Match ( AT1G67710.1 )
(BLAST)

001: MEKSGFSPVG LRVLVVDDDP TWLKILEKML KKCSYEVTTC GLAREALRLL RERKDGYDIV ISDVNMPDMD GFKLLEHVGL ELDLPVIMMS VDGETSRVMK
101: GVQHGACDYL LKPIRMKELK IIWQHVLRKK LQEVRDIEGC GYEGGADWIT RYDEAHFLGG GEDVSFGKKR KDFDFEKKLL QDESDPSSSS SKKARVVWSF
201: ELHHKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS HLQKYRLYLS RLEKGKELKC YSGGVKNADS SPKDVEVNSG YQSPGRSSYV FSGGNSLIQK
301: ATEIDPKPLA SASLSDLNTD VIMPPKTKKT RIGFDPPISS SAFDSLLPWN DVPEVLESKP VLYENSFLQQ QPLPSQSSYV ANSAPSLMEE EMKPPYETPA
401: GGSSVNADEF LMPQDKIPTV TLQDLDPSAM KLQEFNTEAI LRSLNWELPE SHHSVSLDTD LDLTWLQGER FLANTGLQFQ DYSSSPSLLS ELPAHLNWYG
501: NERLPDPDEY SFMVDQGLFI S

Arabidopsis Description

ARR11Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:Q0WRT0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.