Factsheet for VIT_17s0000g10110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g10100.t01	Wine grape	nucleus	73.67	58.42
GSMUA_Achr3P14630_001	Banana	cytosol	32.74	40.55
VIT_01s0010g02230.t01	Wine grape	nucleus	44.91	34.18
Bra004076.1-P	Field mustard	nucleus	37.17	33.01
CDY07410	Canola	nucleus	37.17	33.01
AT1G67710.1	Thale cress	nucleus	37.83	32.82
CDY01838	Canola	nucleus	36.28	32.8
CDY28869	Canola	nucleus	36.5	32.54
Bra004245.1-P	Field mustard	nucleus	36.5	32.23
CDX96070	Canola	nucleus	36.28	31.97
VIT_11s0052g01160.t01	Wine grape	cytosol	15.04	31.48
Os01t0904700-01	Rice	nucleus	40.49	31.44
GSMUA_Achr8P32070_001	Banana	nucleus	37.17	30.83
EES04061	Sorghum	nucleus	39.16	30.57
TraesCS3A01G391600.1	Wheat	nucleus	38.72	29.97
TraesCS3B01G423600.1	Wheat	nucleus	38.5	29.79
Zm00001d012128_P001	Maize	nucleus	38.72	29.02
Zm00001d042463_P001	Maize	nucleus	38.27	28.13
TraesCS3D01G384500.2	Wheat	nucleus	38.72	28.09
VIT_05s0077g01480.t01	Wine grape	nucleus	30.31	21.27
VIT_07s0005g01010.t01	Wine grape	nucleus	23.23	19.66
VIT_04s0008g05900.t01	Wine grape	nucleus	29.87	19.48
VIT_06s0004g05120.t01	Wine grape	nucleus	13.27	19.29
VIT_11s0206g00060.t01	Wine grape	nucleus	29.42	19.19
VIT_01s0011g05830.t01	Wine grape	nucleus	29.2	18.88
VIT_08s0040g00900.t01	Wine grape	nucleus	11.06	16.34
VIT_16s0100g00420.t01	Wine grape	nucleus	19.91	15.2
VIT_16s0100g00430.t01	Wine grape	nucleus	16.15	14.69

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	ProteinID:CCB42897	ProteinID:CCB42897.1
InterPro:CheY-like_superfamily	UniProt:F6GSF2	EMBL:FN594950	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789
InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249	PIRSF:PIRSF036392	PFscan:PS50110	PANTHER:PTHR43874
PANTHER:PTHR43874:SF27	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI000210A5D8	ArrayExpress:VIT_17s0000g10110	EnsemblPlantsGene:VIT_17s0000g10110	EnsemblPlants:VIT_17s0000g10110.t01
unigene:Vvi.25989	SEG:seg	:	:	:	:

Description

Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:F6GSF2]

Coordinates

chr17:+:12284556..12306223

Molecular Weight (calculated)

51302.9 Da

IEP (calculated)

9.283

GRAVY (calculated)

-0.546

Length

452 amino acids

Sequence
(BLAST)

001: MLKKCSYEMT TCCVARDALS MLQERKNSFD IIISDVNMPD MDGFQLLEHL EVEMDLPVIL ISVDGEMNRV MKGVQSGACD YLLKPVRMEE LKNIWQHVLR
101: KKIHEGKNSQ VMISRSSNEL DDGQQLNGGE VSATRKRKDM ENRRHDDQKS VEPSTSKKAR VVWSIDLHQK FVDVVTQIGY DKARPKKILD LMNVPWLTRE
201: NVASHLQKYR FYLSKLRKEN KVKSSQGMMQ QDFTRPAGSF GFQTSNLMHQ KHAANGNPKY TGNNMPLIDK GTRFCHEADK KATASILPVD LKETSASNFL
301: DCQRANVSSQ TILSHPFNHQ SSQSNTTTQT WNEVLMEQQF KQPPNQDPEL YVLLDDDFSH ALLSAPQHLL QVDLQCSANA VGPGTSVPER DKPGSVMIIP
401: LCSQSRRFYI LHIGKKIIEK DDYGKKISMM KVVGGVNGMI MGRRLRILGF GK

Best Arabidopsis Sequence Match ( AT1G67710.1 )
(BLAST)

001: MEKSGFSPVG LRVLVVDDDP TWLKILEKML KKCSYEVTTC GLAREALRLL RERKDGYDIV ISDVNMPDMD GFKLLEHVGL ELDLPVIMMS VDGETSRVMK
101: GVQHGACDYL LKPIRMKELK IIWQHVLRKK LQEVRDIEGC GYEGGADWIT RYDEAHFLGG GEDVSFGKKR KDFDFEKKLL QDESDPSSSS SKKARVVWSF
201: ELHHKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS HLQKYRLYLS RLEKGKELKC YSGGVKNADS SPKDVEVNSG YQSPGRSSYV FSGGNSLIQK
301: ATEIDPKPLA SASLSDLNTD VIMPPKTKKT RIGFDPPISS SAFDSLLPWN DVPEVLESKP VLYENSFLQQ QPLPSQSSYV ANSAPSLMEE EMKPPYETPA
401: GGSSVNADEF LMPQDKIPTV TLQDLDPSAM KLQEFNTEAI LRSLNWELPE SHHSVSLDTD LDLTWLQGER FLANTGLQFQ DYSSSPSLLS ELPAHLNWYG
501: NERLPDPDEY SFMVDQGLFI S

Arabidopsis Description

ARR11Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:Q0WRT0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.