Factsheet for VIT_01s0010g02230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97483	Soybean	nucleus	48.48	63.3
GSMUA_Achr3P14630_001	Banana	cytosol	35.86	58.36
KRH31403	Soybean	nucleus	58.42	57.45
VIT_17s0000g10100.t01	Wine grape	nucleus	50.67	52.81
PGSC0003DMT400031260	Potato	nucleus	50.84	52.07
Solyc05g014260.2.1	Tomato	nucleus	50.0	51.12
Os01t0904700-01	Rice	nucleus	44.11	45.02
VIT_17s0000g10110.t01	Wine grape	nucleus	34.18	44.91
TraesCS3A01G391600.1	Wheat	nucleus	44.11	44.86
TraesCS3B01G423600.1	Wheat	nucleus	44.11	44.86
EES04061	Sorghum	nucleus	43.6	44.73
GSMUA_Achr8P32070_001	Banana	nucleus	40.91	44.59
Zm00001d042463_P001	Maize	nucleus	43.6	42.11
TraesCS3D01G384500.2	Wheat	nucleus	44.11	42.05
Zm00001d012128_P001	Maize	nucleus	42.26	41.63
VIT_11s0052g01160.t01	Wine grape	cytosol	14.98	41.2
VIT_05s0077g01480.t01	Wine grape	nucleus	31.48	29.04
VIT_01s0011g05830.t01	Wine grape	nucleus	31.65	26.9
VIT_04s0008g05900.t01	Wine grape	nucleus	30.3	25.97
VIT_07s0005g01010.t01	Wine grape	nucleus	23.23	25.84
VIT_11s0206g00060.t01	Wine grape	nucleus	29.63	25.4
VIT_06s0004g05120.t01	Wine grape	nucleus	10.44	19.94
VIT_08s0040g00900.t01	Wine grape	nucleus	10.27	19.93
VIT_16s0100g00420.t01	Wine grape	nucleus	19.19	19.26
VIT_16s0100g00430.t01	Wine grape	nucleus	13.13	15.69

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100246057	wikigene:100246057	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300
ProteinID:ACO88948	ProteinID:ACO88948.1	ProteinID:CBI27525	ProteinID:CBI27525.3	InterPro:CheY-like_superfamily	UniProt:D7TAK2
EMBL:FJ822987	EMBL:FN595754	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:Myb_dom_plants
PFAM:PF00072	PFAM:PF00249	PIRSF:PIRSF036392	PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF27
EntrezGene:RRB5	wikigene:RRB5	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI00015CB98F	ArrayExpress:VIT_01s0010g02230	EnsemblPlantsGene:VIT_01s0010g02230
EnsemblPlants:VIT_01s0010g02230.t01	unigene:Vvi.25874	RefSeq:XP_002267616	RefSeq:XP_002267616.1	:	:

Description

Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:D7TAK2]

Coordinates

chr1:+:19206460..19214671

Molecular Weight (calculated)

66951.3 Da

IEP (calculated)

5.492

GRAVY (calculated)

-0.549

Length

594 amino acids

Sequence
(BLAST)

001: MDSAFCPPRT DVFPAGLRVL VVDDDPTWLK ILEKMLKKCL YEVTICGLAR DALNLLRERK DGYDIVISDV NMPDMDGFKL LELVGLEMDL PVIMMSVDGE
101: TSRVMKGVQH GACDYLLKPI RMKELRNIWQ HVFRKKINEV RDIESHESID DFQIMRNGPE QSDDGYLVSG DPTSVKKRKD TENKHDDRDH CDPSSVKKAR
201: VVWSVDLHQK FVRAVNQIGF DKVGPKKILD LMNVPWLTRE NVASHLQKYR LYLSRLQKED DLKTSCGGIK HSDLSPKDST GSFGLSNLTN MHQNDAANSG
301: YGFSGNKKLV QSIDIDPKVQ EGDLKGIISL PRTEQKKMLT GEASDPQKAR SSQMGFNDSF GSIEQDVNYA AFDSSISAQY SWSGEKVPEA QFQEEHRPSV
401: QLETSFNQLP VPGPQHHIQV DCLQPTLPPI SPGSSRKERD KASPAKIKPL YASYDSHHVS NVSSAGSEID LFSVQSKCQM VNPQAFEPIS NITLNMRNQG
501: HNQSGVNDLE SFQRNLISGS GSALESLEDL QVHWLQGDCN PMNLGLRNIE FSDYHDQKLI TEVPFHLYDP LKLDYEYLSD LTEYPIMDQG LFIA

Best Arabidopsis Sequence Match ( AT1G67710.1 )
(BLAST)

001: MEKSGFSPVG LRVLVVDDDP TWLKILEKML KKCSYEVTTC GLAREALRLL RERKDGYDIV ISDVNMPDMD GFKLLEHVGL ELDLPVIMMS VDGETSRVMK
101: GVQHGACDYL LKPIRMKELK IIWQHVLRKK LQEVRDIEGC GYEGGADWIT RYDEAHFLGG GEDVSFGKKR KDFDFEKKLL QDESDPSSSS SKKARVVWSF
201: ELHHKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS HLQKYRLYLS RLEKGKELKC YSGGVKNADS SPKDVEVNSG YQSPGRSSYV FSGGNSLIQK
301: ATEIDPKPLA SASLSDLNTD VIMPPKTKKT RIGFDPPISS SAFDSLLPWN DVPEVLESKP VLYENSFLQQ QPLPSQSSYV ANSAPSLMEE EMKPPYETPA
401: GGSSVNADEF LMPQDKIPTV TLQDLDPSAM KLQEFNTEAI LRSLNWELPE SHHSVSLDTD LDLTWLQGER FLANTGLQFQ DYSSSPSLLS ELPAHLNWYG
501: NERLPDPDEY SFMVDQGLFI S

Arabidopsis Description

ARR11Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:Q0WRT0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.