Factsheet for VIT_11s0052g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P13050_001	Banana	cytosol	26.85	25.33
CDY56439	Canola	nucleus	29.63	23.27
Bra037427.1-P	Field mustard	nucleus	29.17	23.08
CDX86245	Canola	nucleus	29.17	23.08
AT5G49240.1	Thale cress	cytoskeleton, cytosol, nucleus	31.02	22.95
Zm00001d032784_P001	Maize	nucleus	32.87	21.07
KXG38401	Sorghum	nucleus	33.33	20.75
VIT_07s0005g01010.t01	Wine grape	nucleus	41.2	16.67
VIT_17s0000g10100.t01	Wine grape	nucleus	43.06	16.32
VIT_05s0077g01480.t01	Wine grape	nucleus	46.76	15.68
CDY16482	Canola	nucleus	31.48	15.45
AT3G62670.1	Thale cress	nucleus	30.09	15.26
Bra014172.1-P	Field mustard	nucleus	31.48	15.14
CDX77263	Canola	nucleus	31.48	15.11
VIT_17s0000g10110.t01	Wine grape	nucleus	31.48	15.04
VIT_11s0206g00060.t01	Wine grape	nucleus	48.15	15.01
VIT_01s0010g02230.t01	Wine grape	nucleus	41.2	14.98
VIT_04s0008g05900.t01	Wine grape	nucleus	47.69	14.86
CDY33920	Canola	nucleus	28.7	14.32
Bra020652.1-P	Field mustard	nucleus	28.7	14.06
CDX76652	Canola	nucleus	26.85	13.84
CDY11437	Canola	nucleus	26.85	13.81
Bra041027.1-P	Field mustard	nucleus	26.85	13.81
VIT_01s0011g05830.t01	Wine grape	nucleus	44.44	13.73
CDY05641	Canola	nucleus	28.24	13.68
Bra032275.1-P	Field mustard	nucleus	31.48	13.47
CDY29358	Canola	nucleus	31.48	13.47
Os10t0463400-01	Rice	nucleus	20.83	13.2
CDY04335	Canola	nucleus	30.09	12.31
AT1G49190.2	Thale cress	nucleus	31.94	11.09
VIT_16s0100g00420.t01	Wine grape	nucleus	29.17	10.64
VIT_06s0004g05120.t01	Wine grape	nucleus	10.19	7.07
VIT_16s0100g00430.t01	Wine grape	nucleus	14.35	6.24
VIT_08s0040g00900.t01	Wine grape	nucleus	8.8	6.21
KRH60425	Soybean	nucleus	10.19	6.11
TraesCSU01G179800.1	Wheat	nucleus, plastid	0.46	0.3
TraesCSU01G196300.1	Wheat	nucleus, plastid	0.46	0.3
TraesCS7A01G539600.1	Wheat	nucleus	0.46	0.3

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100266808	wikigene:100266808	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300
EMBL:AM460059	ProteinID:CAN70187	ProteinID:CAN70187.1	ProteinID:CBI17816	ProteinID:CBI17816.3	InterPro:CheY-like_superfamily
UniProt:D7SQ85	EMBL:FN594964	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005975	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
InterPro:IPR001789	EntrezGene:LOC100266808	wikigene:LOC100266808	PFAM:PF00072	PFscan:PS50110	PANTHER:PTHR43874
PANTHER:PTHR43874:SF7	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0001BE1714	ArrayExpress:VIT_11s0052g01160
EnsemblPlantsGene:VIT_11s0052g01160	EnsemblPlants:VIT_11s0052g01160.t01	unigene:Vvi.25976	RefSeq:XP_002270118	RefSeq:XP_002270118.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:18936290..18937226

Molecular Weight (calculated)

24743.7 Da

IEP (calculated)

4.883

GRAVY (calculated)

-0.524

Length

216 amino acids

Sequence
(BLAST)

001: MSDDYETPSP DGTQFPDGLR VLAVDDNIVC LKILVTLLEQ CRYKVTATTK ACEALEMLRE NRENFDIVIT DVKMPDMDGF TLLKIIGLEM DIPVIMTSVN
101: DDRSTVLKGI RHGARDYLLK PVRVLEIKNI WQHVVRKNLF DSGKPGVKEE KAMEMEKSKE KGGGEEEEEE EDHPKEHSFE DGSVRKKQRL NWTSELHIKF
201: LNAIHQLETA DSRCLI

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.