CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33920	Canola	nucleus	90.58	93.3
CDX86245	Canola	nucleus	37.0	60.44
CDY56439	Canola	nucleus	37.0	60.0
AT5G49240.1	Thale cress	cytoskeleton, cytosol, nucleus	34.3	52.4
CDY52720	Canola	nucleus	17.04	40.64
CDX73905	Canola	nucleus	8.97	40.0
CDY54630	Canola	cytosol	11.88	34.19
CDY54632	Canola	cytosol	10.99	33.11
CDX82391	Canola	cytosol	10.76	32.43
VIT_11s0052g01160.t01	Wine grape	cytosol	13.68	28.24
CDX73907	Canola	nucleus	8.3	27.41
CDY64566	Canola	nucleus	21.3	25.27
CDY09419	Canola	nucleus	21.08	24.93
Zm00001d032784_P001	Maize	nucleus	18.83	24.93
CDX87845	Canola	cytosol, extracellular	7.17	23.88
KXG38401	Sorghum	nucleus	18.39	23.63
GSMUA_Achr5P13050_001	Banana	cytosol	11.88	23.14
CDX75892	Canola	nucleus	23.09	22.79
CDX92102	Canola	nucleus	24.66	21.91
CDX95898	Canola	nucleus	24.66	21.78
CDY68249	Canola	nucleus	21.3	21.74
CDY13465	Canola	nucleus	23.54	20.27
CDX72337	Canola	nucleus	23.54	20.08
CDY16482	Canola	nucleus	19.73	20.0
CDY01838	Canola	nucleus	22.42	20.0
CDY28869	Canola	nucleus	22.65	19.92
CDX68803	Canola	nucleus	22.65	19.77
CDX96070	Canola	nucleus	22.65	19.69
CDY07410	Canola	nucleus	22.42	19.65
CDX90546	Canola	nucleus	25.78	19.49
CDY09718	Canola	nucleus	26.23	19.47
CDX68392	Canola	nucleus	11.44	19.47
CDX77263	Canola	nucleus	19.51	19.33
PGSC0003DMT400090747	Potato	nucleus	23.99	19.14
CDY02794	Canola	nucleus	20.4	19.08
CDX79963	Canola	nucleus	10.54	19.03
CDX82988	Canola	nucleus	10.99	18.92
CDY61256	Canola	nucleus	11.44	18.61
CDY53674	Canola	nucleus	10.31	18.55
CDX99104	Canola	nucleus	11.88	18.28
CDY29358	Canola	nucleus	20.63	18.22
CDY70103	Canola	nucleus	23.54	18.2
Os10t0463400-01	Rice	nucleus	13.9	18.18
CDY35371	Canola	nucleus	23.54	18.07
Solyc12g099380.1.1	Tomato	nucleus	22.42	18.02
CDY00969	Canola	nucleus	11.44	17.96
CDY04335	Canola	nucleus	21.08	17.8
CDY08579	Canola	nucleus	9.64	17.77
CDX82389	Canola	nucleus	23.99	17.57
KRH60425	Soybean	nucleus	14.13	17.5
CDX98816	Canola	nucleus	9.87	16.86
CDX80940	Canola	nucleus	9.19	16.8
VIT_07s0005g01010.t01	Wine grape	nucleus	19.96	16.67
CDX76652	Canola	nucleus	15.47	16.47
CDY11437	Canola	nucleus	15.47	16.43
CDY52133	Canola	nucleus	9.19	16.4
CDY02793	Canola	nucleus	21.97	15.65
CDY32725	Canola	nucleus	21.75	15.57
CDY36273	Canola	mitochondrion	8.3	15.48
CDY32209	Canola	nucleus	15.02	14.19
CDY67763	Canola	nucleus	18.83	14.14
CDY34423	Canola	nucleus	15.02	14.11
CDX81041	Canola	nucleus	17.49	13.78
CDX78284	Canola	nucleus	17.26	13.56
CDX98997	Canola	nucleus	17.94	13.36
CDY49965	Canola	mitochondrion	10.09	13.35
CDX70016	Canola	nucleus	17.94	13.33
CDY14053	Canola	nucleus	18.39	10.96
CDX86925	Canola	nucleus	15.7	10.34
TraesCS7A01G539600.1	Wheat	nucleus	5.38	7.1
CDY30695	Canola	nucleus	11.44	6.77
TraesCSU01G179800.1	Wheat	nucleus, plastid	2.47	3.32
TraesCSU01G196300.1	Wheat	nucleus, plastid	2.47	3.32

Protein Annotations

Gene3D:1.10.10.60	Gene3D:3.40.50.2300	MapMan:35.1	GO:A0A078EWP4	EnsemblPlants:CDY05641	ProteinID:CDY05641
ProteinID:CDY05641.1	InterPro:CheY-like_superfamily	ncoils:Coil	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00120626001	InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:Myb_dom_plants	PFAM:PF00072	PFscan:PS50110
PANTHER:PTHR43874	PANTHER:PTHR43874:SF32	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
TIGRFAMs:TIGR01557	UniParc:UPI0004EE54B2	SEG:seg	:	:	:

Description

BnaC02g38960D

Coordinates

chrLK031963:-:454229..459824

Molecular Weight (calculated)

51378.4 Da

IEP (calculated)

6.715

GRAVY (calculated)

-0.574

Length

446 amino acids

Sequence
(BLAST)

001: MFTCNFPEGL RVLVFVENLQ TLLSLEKHLQ DFQYKVTICQ EGAGAMHLLR NHMNKFDIAI IEAQNSTVDI FRLISEIASE IDLPIIITSK DDSVQSVINW
101: MKIGVCDYLI KPIRPEDLRF IFKHVVKKMQ VGKRVESEEK ATAEKSSSVG DSTIRNPNKR KRSMFIDGQV GEKDQDHVRD STTKKRRVVW DNELKKKFLD
201: AMEDLGPEAV PKKILERMNV VGMTRENVAS HLQKHRMLLN KQKSQNEKDE KKRFLLSPQG GLHSGEGSSK FYRGSNIQFS TQHISNIPHQ PLRHHHDGVP
301: VAVSTRNLLM TNQHHHQISD FTCIENVEES LIYTEEDGEV SNLASFFTQK SEEMSLSHLH EPVMATTMLS NDNQLFPNQQ QMMNFHEPSI LHTHSFPLSL
401: TPSSFLDQKE TIMMMNVDEG LQQWFLNEQE QPNLTDENRF SSINPR

Best Arabidopsis Sequence Match ( AT5G49240.1 )
(BLAST)

001: MQPLNMAEIL DHRGVLTDGD DGPFRNLTNF YDMFSSNFPE GLRVLVFDED PSYLLILERH LQKFQYQVTI CNEVNKAMHT LRNHRNRFDL AMIQVNNAEG
101: DIFRFLSEIG SEMDLPIIII SEDDSVKSVK KWMINGAADY LIKPIRPEDL RIVFKHLVKK MRERRSVVTG EAEKAAGEKS SSVGDSTIRN PNKSKRSSCL
201: EAEVNEEDRH DHNDRACASS AKKRRVVWDE ELHQNFLNAV DFLGLERAVP KKILDVMKVD YISRENVASH LQVTFLIYNI IVHFQQHFCF YS

Arabidopsis Description

APRR4Putative two-component response regulator-like APRR4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ16]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.