Factsheet for Solyc12g099380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090747	Potato	nucleus	82.16	81.57
Solyc01g065540.2.1	Tomato	nucleus	42.88	35.16
Solyc05g054390.2.1	Tomato	nucleus	40.0	33.48
Bra037427.1-P	Field mustard	nucleus	15.32	31.14
CDX86245	Canola	nucleus	15.32	31.14
CDY56439	Canola	nucleus	15.32	30.91
GSMUA_Achr5P13050_001	Banana	cytosol	12.61	30.57
AT5G49240.1	Thale cress	cytoskeleton, cytosol, nucleus	16.04	30.48
Zm00001d032784_P001	Maize	nucleus	17.48	28.78
KXG38401	Sorghum	nucleus	16.94	27.09
Solyc11g072330.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	14.96	25.15
VIT_07s0005g01010.t01	Wine grape	nucleus	23.96	24.91
Solyc03g026250.1.1	Tomato	nucleus	14.59	24.32
Solyc07g005140.2.1	Tomato	nucleus	28.65	23.91
CDY33920	Canola	nucleus	18.2	23.33
CDY16482	Canola	nucleus	18.38	23.18
Solyc04g008050.2.1	Tomato	nucleus	27.03	22.94
Bra020652.1-P	Field mustard	nucleus	18.2	22.9
Solyc12g010330.1.1	Tomato	nucleus	29.01	22.74
Bra014172.1-P	Field mustard	nucleus	18.38	22.72
CDY05641	Canola	nucleus	18.02	22.42
Solyc06g005680.2.1	Tomato	nucleus	10.63	22.18
CDX77263	Canola	nucleus	17.66	21.78
CDX76652	Canola	nucleus	16.4	21.72
CDY11437	Canola	nucleus	16.4	21.67
Solyc06g076350.2.1	Tomato	nucleus	12.43	21.43
Bra041027.1-P	Field mustard	nucleus	16.22	21.43
Solyc05g014260.2.1	Tomato	nucleus	22.16	21.17
AT3G62670.1	Thale cress	nucleus	16.22	21.13
Os10t0463400-01	Rice	nucleus	12.79	20.82
CDY29358	Canola	nucleus	18.74	20.59
Bra032275.1-P	Field mustard	nucleus	18.74	20.59
KRH60425	Soybean	nucleus	13.15	20.28
Solyc07g019550.1.1	Tomato	nucleus	13.15	19.89
Solyc10g080960.1.1	Tomato	nucleus	9.19	19.17
CDY04335	Canola	nucleus	18.2	19.13
Solyc01g091810.1.1	Tomato	nucleus	18.74	17.99
Solyc10g078310.1.1	Tomato	nucleus	9.37	17.93
AT1G49190.2	Thale cress	nucleus	19.1	17.04
TraesCS7A01G539600.1	Wheat	nucleus	5.95	9.76
TraesCSU01G179800.1	Wheat	nucleus, plastid	3.42	5.74
TraesCSU01G196300.1	Wheat	nucleus, plastid	3.42	5.74

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR001789	InterPro:IPR017930	UniProt:K4DHV9	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF23	InterPro:SANT/Myb
SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	EnsemblPlantsGene:Solyc12g099380.1	EnsemblPlants:Solyc12g099380.1.1
TIGRFAMs:TIGR01557	UniParc:UPI000276A6C2	:	:	:	:

Description

No Description!

Coordinates

chr12:-:66547979..66552131

Molecular Weight (calculated)

62783.8 Da

IEP (calculated)

5.251

GRAVY (calculated)

-0.600

Length

555 amino acids

Sequence
(BLAST)

001: MSTSGACMNS GEFPTFRLLV VDDDTFYLNN LEQTLKKCQY EVTTCNRAED ALSLLRDNKN NFHLVIIDVH IPDMDGFELL KHIVLEMNLP VVMMSADDSR
101: SVAMKCVIDG AHYCLIKPVS MESLQNIWQH IVRQNKDEWK CKILDQSGDV EQPKEVEYSC VTNEVRLKSS KKKRAEGYEM EERSDTTTLK KARTTWSAEL
201: HRKFLEAVDF YGINKVVPKK ILERMNVAGL KREQVASHLQ KHRLIQRKNQ SEQNNACMGD SEATIGTMSN RFQPLAPISQ FPAQNLAIWG RPATNSPMFV
301: PLADQRNHFS FENSMLRYQG QQQMNNRNEQ TNLLYGIPTA VEQNPSYFGM NMPVGRISQP QLQAHNMLRE SNKFLSQNGL VHNPRDSMYN QFPRASSSAI
401: DCSLNQNISF AGSTFPMSGN SATSTTKEDV NSDDIFNELY QENVGSTLDT SYHSSIHHGI WSMEQSGQNV NSNTLIAEAV LCSGQEIGHV NPVPRPYVNA
501: ERYPSSSYQS ATFPEPSDQD LMSAMLEQQQ QESDEPVAYA QFCDDNEDAL GNFPT

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.