Factsheet for PGSC0003DMT400090747

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099380.1.1	Tomato	nucleus	81.57	82.16
PGSC0003DMT400065835	Potato	nucleus	43.83	36.3
PGSC0003DMT400060506	Potato	nucleus	42.4	35.75
Bra037427.1-P	Field mustard	nucleus	15.74	32.23
CDX86245	Canola	nucleus	15.74	32.23
CDY56439	Canola	nucleus	15.74	32.0
AT5G49240.1	Thale cress	cytoskeleton, cytosol, nucleus	16.46	31.51
PGSC0003DMT400035788	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	11.99	30.88
Zm00001d032784_P001	Maize	nucleus	18.25	30.27
KXG38401	Sorghum	nucleus	18.07	29.11
GSMUA_Achr5P13050_001	Banana	cytosol	11.81	28.82
VIT_07s0005g01010.t01	Wine grape	nucleus	26.48	27.72
PGSC0003DMT400075907	Potato	nucleus	28.98	24.81
CDY33920	Canola	nucleus	19.14	24.71
Bra020652.1-P	Field mustard	nucleus	19.14	24.26
CDY05641	Canola	nucleus	19.14	23.99
PGSC0003DMT400020233	Potato	nucleus	29.87	23.62
CDY16482	Canola	nucleus	18.43	23.41
PGSC0003DMT400031260	Potato	nucleus	24.15	23.28
Os10t0463400-01	Rice	nucleus	14.13	23.17
Bra014172.1-P	Field mustard	nucleus	18.43	22.94
CDX76652	Canola	nucleus	16.99	22.67
CDY11437	Canola	nucleus	16.99	22.62
Bra041027.1-P	Field mustard	nucleus	16.82	22.38
PGSC0003DMT400077979	Potato	nucleus	12.34	21.97
PGSC0003DMT400005490	Potato	nucleus	11.81	21.85
AT3G62670.1	Thale cress	nucleus	16.64	21.83
CDX77263	Canola	nucleus	17.53	21.78
Bra032275.1-P	Field mustard	nucleus	19.32	21.39
CDY29358	Canola	nucleus	19.32	21.39
PGSC0003DMT400008290	Potato	nucleus	29.52	21.35
KRH60425	Soybean	nucleus	13.42	20.83
PGSC0003DMT400072213	Potato	nucleus	9.84	20.68
CDY04335	Canola	nucleus	18.78	19.89
PGSC0003DMT400018485	Potato	nucleus	9.66	18.62
PGSC0003DMT400089008	Potato	nucleus	18.78	18.01
AT1G49190.2	Thale cress	nucleus	18.6	16.72
TraesCS7A01G539600.1	Wheat	nucleus	5.37	8.88
TraesCSU01G179800.1	Wheat	nucleus, plastid	2.86	4.83
TraesCSU01G196300.1	Wheat	nucleus, plastid	2.86	4.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	ncoils:Coil
GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789	UniProt:M1DL33	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400040318	PGSC:PGSC0003DMG400040318	EnsemblPlants:PGSC0003DMT400090747	PIRSF:PIRSF036392	PFscan:PS50110
PANTHER:PTHR43874	PANTHER:PTHR43874:SF23	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI0002953FA6	:	:

Description

Type-B response regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400040318]

Coordinates

chr12:-:60090199..60093910

Molecular Weight (calculated)

63453.4 Da

IEP (calculated)

6.344

GRAVY (calculated)

-0.462

Length

559 amino acids

Sequence
(BLAST)

001: MSTSGACLNS GEFPTFRLLV VDDDTFYLNN LEQMLKKCQY EVTTCNREEA ALSLLRENKN YFHLVIIDVH MPDMDGFELL QYIALEMDLP VVMMSADDSR
101: SVVMKCLIHG AHYCLTKPVS MESLQNIWQH IVRQNKDEWK CKILNQSGNV EQPKEVEYSC VTNEGGLKSS WKRKAEEYET EERSDTTTLK KARTIWSAEL
201: HRKFVDAVNF LGMDKAVPKK ILELMNVPGL KREHVASHLQ KHRLLLRKYQ SEPNNAIMGH SEPTIGTMSN RFQALAPISQ FPAQNLATWG RPATNSPMFV
301: PLADQRDHFS YENPMLRYQG QQQMNDRTKQ VNLLYGIPTV VEQNPSYLGM NMPVGRISQP QLQAHNMLRE SNKFLSQNGL VHNARDRMYN QVPQASSSAI
401: DCSLNQNISL TGSSFPMSGN SAMSTTKEDV NSDDIFNELY QHNVGSIFDT SYHSSIHHGI LSMEQIGQNV NSNSPIAEAV LCSGQEIGHV NPMPRPHVNA
501: ERYPSSSYQS TTFPEPFDQE DLMSAFLEQV GLNLLSLHRC NTSSYVISEY FSPRTLIFL

Best Arabidopsis Sequence Match ( AT3G16857.3 )
(BLAST)

001: MALSLLRKNK HGFDIVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE
101: ETGERQQQQH RGGGGGAAVS GGEDAVDDNS SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL
201: MNVPGLTREN VASHLQKYRI YLRRLGGVSQ HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER
301: SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS
401: NRISERSGFS GRNNIPESSR VLPTSYTNLT TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN
501: IGIAFDSHQD SESAAFSASE AYSSSSMSRH NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQEG
601: IAPVDGEFDF DAYSIDNIPV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.