Factsheet for PGSC0003DMT400005490

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005680.2.1	Tomato	nucleus	80.79	91.73
GSMUA_Achr5P07060_001	Banana	nucleus	47.35	62.45
VIT_06s0004g05120.t01	Wine grape	nucleus	64.24	62.38
PGSC0003DMT400077979	Potato	nucleus	62.25	59.87
KRH24748	Soybean	nucleus	58.61	57.84
KRH29751	Soybean	nucleus	58.94	55.11
Zm00001d011785_P001	Maize	nucleus	39.4	54.34
Os01t0971800-00	Rice	nucleus	42.72	54.2
CDY61256	Canola	nucleus	49.01	54.01
CDX68392	Canola	nucleus	46.69	53.82
CDX82988	Canola	nucleus	46.03	53.67
GSMUA_Achr10P...	Banana	nucleus	49.01	53.05
CDX99104	Canola	nucleus	50.66	52.76
Bra018204.1-P	Field mustard	nucleus	52.65	52.3
Zm00001d041960_P001	Maize	nucleus	44.37	51.94
Bra033809.1-P	Field mustard	nucleus	48.68	51.58
AT5G59570.2	Thale cress	nucleus	49.67	50.34
HORVU3Hr1G114970.1	Barley	nucleus	44.04	48.54
GSMUA_AchrUn_...	Banana	nucleus	48.68	48.2
AT3G46640.3	Thale cress	nucleus	51.66	48.15
TraesCS3B01G594300.1	Wheat	nucleus	45.7	48.08
TraesCS3D01G531900.1	Wheat	nucleus	44.37	47.69
TraesCS3A01G526600.1	Wheat	nucleus	44.7	47.37
PGSC0003DMT400072213	Potato	nucleus	34.11	38.72
PGSC0003DMT400018485	Potato	nucleus	35.1	36.55
PGSC0003DMT400090747	Potato	nucleus	21.85	11.81
PGSC0003DMT400075907	Potato	nucleus	24.5	11.33
PGSC0003DMT400060506	Potato	nucleus	23.84	10.86
PGSC0003DMT400065835	Potato	nucleus	24.17	10.81
PGSC0003DMT400035788	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	7.62	10.6
PGSC0003DMT400020233	Potato	nucleus	24.5	10.47
PGSC0003DMT400031260	Potato	nucleus	19.54	10.17
PGSC0003DMT400008290	Potato	nucleus	24.17	9.44
PGSC0003DMT400089008	Potato	nucleus	17.22	8.92

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102588078	MapMan:27.1.6.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0ZPZ2	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400002144	PGSC:PGSC0003DMG400002144	EnsemblPlants:PGSC0003DMT400005490	PFscan:PS51294	PANTHER:PTHR31442	PANTHER:PTHR31442:SF12
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00029645C7	RefSeq:XP_006358701.1	SEG:seg

Description

NbPCL1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002144]

Coordinates

chr6:-:4435580..4437135

Molecular Weight (calculated)

33652.7 Da

IEP (calculated)

6.272

GRAVY (calculated)

-0.774

Length

302 amino acids

Sequence
(BLAST)

001: MGEEVTIMDG DGFAGDDNRV VEWEDGLPSF DDLTPLSQAL IPPELASAFR ITPEPVKTMT DVNRASESAF SSLRAGQLHL LSEKYNFNEG RNGDRNHEND
101: EVDLTRDGSE SRKTRRIDPE MVTEEADSAL RNENCGDDNS AKMQKRPRLV WTPQLHKRFV DVVAHLGIKN AVPKTIMQLM NVEGLTRENV ASHLQKYRLY
201: LKRMQGLSNE GPSSSDHLFA STPVPQSLQQ SGGNGHSGNG HSSNGHMPMP MPMPMMYPPQ MVPMPMMGMS GHGFHHQYNM GQPRDWSGNK FGSYHHVAPG
301: EK

Best Arabidopsis Sequence Match ( AT3G46640.1 )
(BLAST)

001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN

Arabidopsis Description

PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.