Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G526600.1 | Wheat | nucleus | 94.77 | 95.44 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 92.68 | 94.66 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 90.24 | 94.53 |
| Os01t0971800-00 | Rice | nucleus | 57.84 | 69.75 |
| Zm00001d011785_P001 | Maize | nucleus | 49.48 | 64.84 |
| Zm00001d041960_P001 | Maize | nucleus | 57.14 | 63.57 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 43.55 | 54.59 |
| Solyc06g005680.2.1 | Tomato | nucleus | 45.99 | 49.62 |
| GSMUA_Achr10P... | Banana | nucleus | 47.74 | 49.1 |
| CDX68392 | Canola | nucleus | 42.86 | 46.95 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 50.87 | 46.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.48 | 46.56 |
| CDX82988 | Canola | nucleus | 41.81 | 46.33 |
| CDY61256 | Canola | nucleus | 43.9 | 45.99 |
| PGSC0003DMT400005490 | Potato | nucleus | 48.08 | 45.7 |
| Bra033809.1-P | Field mustard | nucleus | 42.86 | 43.16 |
| CDX99104 | Canola | nucleus | 43.55 | 43.1 |
| KRH76596 | Soybean | mitochondrion | 18.12 | 42.98 |
| KRH24748 | Soybean | nucleus | 45.64 | 42.81 |
| KRH29751 | Soybean | nucleus | 46.69 | 41.49 |
| Bra018204.1-P | Field mustard | nucleus | 43.55 | 41.12 |
| PGSC0003DMT400077979 | Potato | nucleus | 44.6 | 40.76 |
| AT5G59570.2 | Thale cress | nucleus | 42.16 | 40.6 |
| Solyc06g076350.2.1 | Tomato | nucleus | 43.55 | 38.82 |
| AT3G46640.3 | Thale cress | nucleus | 42.16 | 37.35 |
| TraesCS3B01G394200.1 | Wheat | nucleus, plastid | 28.57 | 36.44 |
| TraesCS1B01G268900.1 | Wheat | nucleus | 34.49 | 32.14 |
| TraesCS7B01G461400.1 | Wheat | nucleus | 13.24 | 15.02 |
| TraesCS6B01G174400.1 | Wheat | nucleus | 21.95 | 10.13 |
| TraesCS3B01G423600.1 | Wheat | nucleus | 20.21 | 9.93 |
| TraesCS4B01G240100.1 | Wheat | nucleus | 23.0 | 9.65 |
| TraesCS7B01G049000.1 | Wheat | nucleus | 19.86 | 9.13 |
| TraesCS6B01G392000.1 | Wheat | nucleus | 21.25 | 9.05 |
| TraesCS7B01G049200.1 | Wheat | nucleus | 19.86 | 8.68 |
| TraesCS7B01G420900.1 | Wheat | nucleus | 14.29 | 8.28 |
| TraesCS7B01G422000.1 | Wheat | nucleus | 15.33 | 7.82 |
| TraesCS3B01G517000.1 | Wheat | nucleus | 15.33 | 7.71 |
| TraesCS7B01G422100.1 | Wheat | nucleus | 14.98 | 7.53 |
| TraesCS7B01G421000.1 | Wheat | cytosol | 2.79 | 7.48 |
| TraesCS7B01G408700.1 | Wheat | nucleus | 16.03 | 7.3 |
| TraesCS7B01G420800.1 | Wheat | cytosol | 1.74 | 4.67 |
| TraesCS7B01G408600.1 | Wheat | cytosol | 2.09 | 4.41 |
| TraesCS7B01G461300.1 | Wheat | nucleus, plastid | 0.7 | 0.6 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G594300.1 | EnsemblPlantsGene:TraesCS3B01G594300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | InterPro:SANT/Myb |
| PANTHER:PTHR31442 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| MapMan:27.1.6.3.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:817577365..817578228
Molecular Weight (calculated)
29915.8 Da
IEP (calculated)
7.370
GRAVY (calculated)
-0.506
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEAGGYDF DFGGGGYGGY DGRVTEWETG LPGCDELTPL SQPLVPPGLA AAFRIPPEPG RTLLDVHRAS SATVSRLRSA SSSPSSGNGH ATGGGSFPSF
101: PGKAAAAAEA GEDSGNRDNN SAESGGDKSA AAATKRARLV WTPQLHKRFV EVVAHLGIKS AVPKTIMQLM NVEGLTRENV ASHLQKYRLY VKRMQGLSNE
201: GPSASDHIFA STPVPPSLRE PQVPVPHAAA MAPAMYHHHP APMGGVAAGH GGYYQQQHSG HAVYNGYGGH GHGGGVSSYP HYHHGDQ
101: PGKAAAAAEA GEDSGNRDNN SAESGGDKSA AAATKRARLV WTPQLHKRFV EVVAHLGIKS AVPKTIMQLM NVEGLTRENV ASHLQKYRLY VKRMQGLSNE
201: GPSASDHIFA STPVPPSLRE PQVPVPHAAA MAPAMYHHHP APMGGVAAGH GGYYQQQHSG HAVYNGYGGH GHGGGVSSYP HYHHGDQ
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.