Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68392 | Canola | nucleus | 65.74 | 81.3 |
| Bra018204.1-P | Field mustard | nucleus | 75.62 | 80.59 |
| Bra033809.1-P | Field mustard | nucleus | 70.37 | 80.0 |
| CDX99104 | Canola | nucleus | 71.6 | 80.0 |
| CDX82988 | Canola | nucleus | 63.89 | 79.92 |
| CDY61256 | Canola | nucleus | 66.05 | 78.1 |
| AT5G59570.2 | Thale cress | nucleus | 57.72 | 62.75 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 38.58 | 54.59 |
| Solyc06g005680.2.1 | Tomato | nucleus | 44.14 | 53.76 |
| PGSC0003DMT400005490 | Potato | nucleus | 48.15 | 51.66 |
| Os01t0971800-00 | Rice | nucleus | 37.65 | 51.26 |
| KRH24748 | Soybean | nucleus | 48.15 | 50.98 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 48.15 | 50.16 |
| Zm00001d011785_P001 | Maize | nucleus | 33.33 | 49.32 |
| KRH29751 | Soybean | nucleus | 49.07 | 49.23 |
| GSMUA_Achr10P... | Banana | nucleus | 41.36 | 48.03 |
| Zm00001d041960_P001 | Maize | nucleus | 36.42 | 45.74 |
| PGSC0003DMT400077979 | Potato | nucleus | 42.9 | 44.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.67 | 44.26 |
| Solyc06g076350.2.1 | Tomato | nucleus | 43.83 | 44.1 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 37.04 | 43.8 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 37.35 | 42.46 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 36.73 | 42.35 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 37.35 | 42.16 |
| AT2G40970.1 | Thale cress | nucleus | 30.56 | 39.92 |
| AT5G05090.1 | Thale cress | nucleus | 29.63 | 36.09 |
| AT3G10760.1 | Thale cress | nucleus | 31.17 | 30.15 |
| AT2G01760.2 | Thale cress | nucleus | 18.83 | 14.88 |
| AT5G49240.1 | Thale cress | cytoskeleton, cytosol, nucleus | 12.04 | 13.36 |
| AT2G25180.1 | Thale cress | nucleus | 20.99 | 11.41 |
| AT3G62670.1 | Thale cress | nucleus | 14.81 | 11.27 |
| AT1G67710.1 | Thale cress | nucleus | 17.28 | 10.75 |
| AT3G16857.2 | Thale cress | nucleus | 20.68 | 9.71 |
| AT4G31920.1 | Thale cress | nucleus | 16.36 | 9.6 |
| AT5G58080.1 | Thale cress | nucleus | 18.21 | 9.29 |
| AT2G27070.1 | Thale cress | nucleus | 16.36 | 9.27 |
| AT5G07210.1 | Thale cress | nucleus | 16.98 | 8.86 |
| AT1G49190.2 | Thale cress | nucleus | 13.89 | 7.23 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | EntrezGene:823817 | ProteinID:AEE78188.1 | ArrayExpress:AT3G46640 | EnsemblPlantsGene:AT3G46640 |
| RefSeq:AT3G46640 | TAIR:AT3G46640 | RefSeq:AT3G46640-TAIR-G | EnsemblPlants:AT3G46640.3 | TAIR:AT3G46640.3 | UniProt:F4J959 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010468 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_001319698.1 | Symbol:PCL1 |
| PFAM:PF00249 | PO:PO:0000293 | PFscan:PS51294 | PANTHER:PTHR31442 | PANTHER:PTHR31442:SF12 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0001E92DD1 | SEG:seg | : | : |
Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
Coordinates
chr3:+:17183070..17185354
Molecular Weight (calculated)
35013.6 Da
IEP (calculated)
5.846
GRAVY (calculated)
-0.691
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.