Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61256 | Canola | nucleus | 83.55 | 92.7 |
| Bra033809.1-P | Field mustard | nucleus | 78.95 | 84.21 |
| AT3G46640.3 | Thale cress | nucleus | 80.59 | 75.62 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 41.78 | 55.46 |
| Solyc06g005680.2.1 | Tomato | nucleus | 47.04 | 53.76 |
| Os01t0971800-00 | Rice | nucleus | 41.45 | 52.94 |
| PGSC0003DMT400005490 | Potato | nucleus | 52.3 | 52.65 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 53.29 | 52.09 |
| Zm00001d011785_P001 | Maize | nucleus | 36.84 | 51.14 |
| KRH24748 | Soybean | nucleus | 50.99 | 50.65 |
| KRH29751 | Soybean | nucleus | 50.66 | 47.68 |
| Zm00001d041960_P001 | Maize | nucleus | 40.46 | 47.67 |
| PGSC0003DMT400077979 | Potato | nucleus | 48.36 | 46.82 |
| GSMUA_Achr10P... | Banana | nucleus | 42.43 | 46.24 |
| Solyc06g076350.2.1 | Tomato | nucleus | 48.68 | 45.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.72 | 45.57 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 40.79 | 45.26 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 41.45 | 44.21 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 40.79 | 44.13 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 41.12 | 43.55 |
| Bra001378.1-P | Field mustard | nucleus | 13.82 | 42.86 |
| Bra004593.1-P | Field mustard | nucleus | 32.24 | 39.68 |
| Bra005837.1-P | Field mustard | nucleus | 30.92 | 37.45 |
| Bra009087.1-P | Field mustard | nucleus | 32.24 | 36.7 |
| Bra029866.1-P | Field mustard | nucleus | 33.22 | 35.31 |
| Bra001377.1-P | Field mustard | nucleus | 14.8 | 33.33 |
| Bra034144.1-P | Field mustard | nucleus | 34.87 | 32.62 |
| Bra037427.1-P | Field mustard | nucleus | 14.47 | 16.12 |
| Bra026635.1-P | Field mustard | nucleus | 19.74 | 15.92 |
| Bra020652.1-P | Field mustard | nucleus | 18.09 | 12.47 |
| Bra032035.1-P | Field mustard | nucleus | 21.71 | 11.36 |
| Bra041027.1-P | Field mustard | nucleus | 15.46 | 11.19 |
| Bra012743.1-P | Field mustard | nucleus | 21.05 | 10.81 |
| Bra023972.1-P | Field mustard | nucleus | 17.76 | 10.42 |
| Bra001643.1-P | Field mustard | nucleus | 22.04 | 10.31 |
| Bra014172.1-P | Field mustard | nucleus | 14.8 | 10.02 |
| Bra033527.1-P | Field mustard | nucleus | 20.72 | 9.95 |
| Bra004076.1-P | Field mustard | nucleus | 16.45 | 9.82 |
| Bra004245.1-P | Field mustard | nucleus | 16.45 | 9.77 |
| Bra022183.1-P | Field mustard | nucleus | 21.71 | 9.69 |
| Bra032275.1-P | Field mustard | nucleus | 15.79 | 9.5 |
| Bra020390.1-P | Field mustard | nucleus | 18.42 | 8.99 |
| Bra001641.1-P | Field mustard | cytosol | 3.62 | 7.43 |
| Bra028705.1-P | Field mustard | nucleus | 18.75 | 7.43 |
| Bra009284.1-P | Field mustard | nucleus | 18.42 | 7.24 |
| Bra005928.1-P | Field mustard | nucleus | 17.76 | 7.11 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | EnsemblPlantsGene:Bra018204 | EnsemblPlants:Bra018204.1 | EnsemblPlants:Bra018204.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M4DNW6 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 | PANTHER:PTHR31442:SF12 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000253F54A | SEG:seg | : | : |
Description
AT3G46640 (E=2e-115) PCL1, LUX | PCL1 (PHYTOCLOCK 1); DNA binding / transcription factor
Coordinates
chrA06:-:11024319..11025233
Molecular Weight (calculated)
32884.3 Da
IEP (calculated)
5.949
GRAVY (calculated)
-0.688
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEVRMSDY EVSGEGDRVL EWEMGLPSDD DLTSLSYSLI PPNLAMAFSI TPEKSRTMED VNRASETTFS SLRSGSSGLN TSSSNNNSVA AEEEDRVGSS
101: SPGSDSKKQK TSGDGVAAAA EEGDSGTEDP TGKTLKRPRL VWTPQLHKRF VDVVAHLGIK NAVPKTIMQL MNVEGLTREN VASHLQKYRL YLKRMQGLTT
201: EGPSSSDKLF SSTPVPPQSF QDIGGGNGQG NVSAAVPYGG QPMMQMPVYA HHMGMQGYHD PYHQNLQHHH GAGGFEANPY MMQQNKFGSM ASYPPVGGRS
301: AHEN
101: SPGSDSKKQK TSGDGVAAAA EEGDSGTEDP TGKTLKRPRL VWTPQLHKRF VDVVAHLGIK NAVPKTIMQL MNVEGLTREN VASHLQKYRL YLKRMQGLTT
201: EGPSSSDKLF SSTPVPPQSF QDIGGGNGQG NVSAAVPYGG QPMMQMPVYA HHMGMQGYHD PYHQNLQHHH GAGGFEANPY MMQQNKFGSM ASYPPVGGRS
301: AHEN
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.