Factsheet for Bra001377.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73907	Canola	nucleus	97.04	97.04
Bra001378.1-P	Field mustard	nucleus	47.41	65.31
Bra004593.1-P	Field mustard	nucleus	35.56	19.43
Bra005837.1-P	Field mustard	nucleus	35.56	19.12
Bra009087.1-P	Field mustard	nucleus	37.04	18.73
Bra029866.1-P	Field mustard	nucleus	36.3	17.13
Bra034144.1-P	Field mustard	nucleus	38.52	16.0
Bra018204.1-P	Field mustard	nucleus	33.33	14.8
Bra033809.1-P	Field mustard	nucleus	30.37	14.39
Bra037427.1-P	Field mustard	nucleus	25.93	12.82
Bra026635.1-P	Field mustard	nucleus	31.85	11.41
Bra014172.1-P	Field mustard	nucleus	30.37	9.13
Bra020652.1-P	Field mustard	nucleus	29.63	9.07
Bra041027.1-P	Field mustard	nucleus	25.19	8.1
Bra023972.1-P	Field mustard	nucleus	30.37	7.92
Bra004245.1-P	Field mustard	nucleus	29.63	7.81
Bra004076.1-P	Field mustard	nucleus	28.15	7.47
Bra032035.1-P	Field mustard	nucleus	31.11	7.23
PGSC0003DMT400089008	Potato	nucleus	30.37	7.03
Bra032275.1-P	Field mustard	nucleus	25.93	6.93
Bra012743.1-P	Field mustard	nucleus	30.37	6.93
Solyc01g091810.1.1	Tomato	nucleus	29.63	6.92
Bra033527.1-P	Field mustard	nucleus	29.63	6.32
Bra001643.1-P	Field mustard	nucleus	29.63	6.15
Bra020390.1-P	Field mustard	nucleus	28.15	6.1
Bra001641.1-P	Field mustard	cytosol	6.67	6.08
Bra022183.1-P	Field mustard	nucleus	29.63	5.87
Bra009284.1-P	Field mustard	nucleus	31.85	5.56
Bra028705.1-P	Field mustard	nucleus	31.11	5.48
Bra005928.1-P	Field mustard	nucleus	28.89	5.14

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	EnsemblPlantsGene:Bra001377	EnsemblPlants:Bra001377.1	EnsemblPlants:Bra001377.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:M4CAZ8	InterPro:Myb_dom_plants	PANTHER:PTHR31442
PANTHER:PTHR31442:SF1	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00025406A2	SEG:seg	:

Description

AT3G10760 (E=4e-023) | myb family transcription factor

Coordinates

chrA03:+:16072889..16073296

Molecular Weight (calculated)

15591.6 Da

IEP (calculated)

10.468

GRAVY (calculated)

-0.824

Length

135 amino acids

Sequence
(BLAST)

001: MREDDSNWFA GWKEELPSPN RLMPLSQSQP MPSQLQLPSP QANSSADRGS GDEPARTLRR PRKIWTPQLH QRFLDAIEHL GINDATPKTI TEFMNVEGLT
101: RWSVASHLQI HRLQLEGNER HRKLLASFPV CKRKF

Best Arabidopsis Sequence Match ( AT3G10760.1 )
(BLAST)

001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SG82]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.