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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra013730.1-P
Bra019270.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G25180.1 Bra013730.1-P AT4G23750.1 21705390
AT2G25180.1 Bra019270.1-P AT4G23750.1 21705390
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35371 Canola nucleus 99.83 99.83
CDY70103 Canola nucleus 97.07 97.75
AT2G25180.1 Thale cress nucleus 85.37 83.22
Bra023972.1-P Field mustard nucleus 58.18 65.25
Bra001641.1-P Field mustard cytosol 14.63 57.43
Bra001378.1-P Field mustard nucleus 6.37 37.76
Bra026635.1-P Field mustard nucleus 23.92 36.87
Solyc07g005140.2.1 Tomato nucleus 41.82 36.54
Os02t0182100-01 Rice nucleus 39.07 36.26
Solyc12g010330.1.1 Tomato nucleus 43.37 35.59
PGSC0003DMT400020233 Potato nucleus 43.03 35.36
Zm00001d015521_P001 Maize nucleus 38.38 35.34
EES06387 Sorghum nucleus 38.21 35.18
TraesCS6B01G174400.1 Wheat nucleus 37.35 34.89
HORVU6Hr1G028680.1 Barley nucleus 37.18 34.67
GSMUA_Achr3P13400_001 Banana nucleus 37.01 34.24
TraesCS6A01G146200.3 Wheat nucleus 37.01 33.59
TraesCS6D01G135500.3 Wheat nucleus 37.01 33.33
Bra037427.1-P Field mustard nucleus 15.49 32.97
PGSC0003DMT400008290 Potato nucleus 41.48 31.18
Bra001377.1-P Field mustard nucleus 7.23 31.11
Bra004076.1-P Field mustard nucleus 26.68 30.45
Bra004245.1-P Field mustard nucleus 26.51 30.08
Bra012743.1-P Field mustard nucleus 29.43 28.89
Bra033527.1-P Field mustard nucleus 31.33 28.75
Bra001643.1-P Field mustard nucleus 30.12 26.92
Bra022183.1-P Field mustard nucleus 31.15 26.58
Bra020390.1-P Field mustard nucleus 28.23 26.32
Bra029866.1-P Field mustard nucleus 12.39 25.17
Bra005837.1-P Field mustard nucleus 10.5 24.3
Bra020652.1-P Field mustard nucleus 18.42 24.26
Bra004593.1-P Field mustard nucleus 10.15 23.89
Bra009087.1-P Field mustard nucleus 10.84 23.6
Bra034144.1-P Field mustard nucleus 12.39 22.15
Bra041027.1-P Field mustard nucleus 16.01 22.14
Bra018204.1-P Field mustard nucleus 11.36 21.71
Bra014172.1-P Field mustard nucleus 16.35 21.16
Bra033809.1-P Field mustard nucleus 9.98 20.35
Bra032275.1-P Field mustard nucleus 17.56 20.2
Bra009284.1-P Field mustard nucleus 20.31 15.27
Bra005928.1-P Field mustard nucleus 19.79 15.15
Bra028705.1-P Field mustard nucleus 18.24 13.82
Protein Annotations
Gene3D:1.10.10.60MapMan:11.4.2.4MapMan:15.5.23Gene3D:3.40.50.2300EnsemblPlantsGene:Bra032035EnsemblPlants:Bra032035.1
EnsemblPlants:Bra032035.1-PInterPro:CheY-like_superfamilyGO:GO:0000003GO:GO:0000160GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006950GO:GO:0007154
GO:GO:0007165GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009414
GO:GO:0009628GO:GO:0009653GO:GO:0009719GO:GO:0009735GO:GO:0009736GO:GO:0009791
GO:GO:0009987GO:GO:0010082GO:GO:0010380GO:GO:0010492GO:GO:0031537GO:GO:0040007
GO:GO:0048364GO:GO:0048367GO:GO:0071368GO:GO:0080022GO:GO:0080036GO:GO:0080113
InterPro:Homeobox-like_sfInterPro:IPR001789InterPro:IPR017930UniProt:M4ETA5InterPro:Myb_domInterPro:Myb_dom_plants
PFAM:PF00072PFAM:PF00249PIRSF:PIRSF036392PFscan:PS50110PFscan:PS51294PANTHER:PTHR43874
PANTHER:PTHR43874:SF7InterPro:Response_reg_B-typ_plnInterPro:SANT/MybSMART:SM00448SUPFAM:SSF46689SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiverTIGRFAMs:TIGR01557UniParc:UPI0002544EEESEG:seg::
Description
AT2G25180 (E=4e-256) ARR12 | ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator
Coordinates
chrA04:-:11348788..11351389
Molecular Weight (calculated)
63982.4 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.580
Length
581 amino acids
Sequence
(BLAST)
001: MTVEQQDCVA LDQFPVGMRV LAVDDDQTCL RILESLLHRC QYHVTTTNQA QKALELLREN KNKFDLVISD VDMPDMDGFK LLELVGLEMD LPVIMLSAHS
101: DPKYVMKGVT HGACDYLLKP VRIEELKNIW QHVVRKNRGS NNGDKKDGSG NEGVANSDQN NGRANRKRKD QYNEDEDEER DDNDDPSSQK KPRVVWTVEL
201: HKKFVAAVNQ LGFEKAMPKK ILDLMNVEKL TRENVASHLQ KFRLYLKRIS GNQQAIMANS DLHFLQMSNG LDGFHHRPIP VGTGQFHGGA AAAGMRPFPP
301: NGILGRLNTP SGMSGVRNLS SSPSSGMFLQ NPTDLGKFHH VSSLPLNHID GGNILQGLPM PLEFDQLQTN NNKSIIAGNS MAFPIFPTQQ QSSLPNNNNH
401: LVLEGHPQAP PSAFPGHQIN KRLEHWSNAV SSSSSTLPPP GQNSNSLISH QFDASSSSYS IPFCDSTIPL NPALDHTNPR AFYRATDMDS SANVQPGVYY
501: DSLQMRKSGN YGPTTDAMLS SNNPKEGFTV GQQKLQSGFM GGEAGSLDDI VNSTMKQEQS QGDLSEGDLG YGGFSSLRTC I
Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)
001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI
Arabidopsis Description
ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.