Factsheet for HORVU6Hr1G028680.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G005210.2
HORVU0Hr1G016350.1
HORVU1Hr1G041890.1
HORVU3Hr1G052320.1
HORVU3Hr1G068330.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31920.1	HORVU3Hr1G052320.1	AT1G01300.1	18642946
AT4G31920.1	HORVU3Hr1G068330.1	AT1G01300.1	18642946
AT4G31920.1	HORVU0Hr1G005210.2	AT5G03230.1	18642946
AT4G31920.1	HORVU0Hr1G016350.1	AT5G03230.1	18642946
AT4G31920.1	HORVU1Hr1G041890.1	AT5G03230.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G174400.1	Wheat	nucleus	96.63	96.78
TraesCS6D01G135500.3	Wheat	nucleus	95.18	91.94
TraesCS6A01G146200.3	Wheat	nucleus	94.22	91.72
Os02t0182100-01	Rice	nucleus	76.4	76.04
EES06387	Sorghum	nucleus	74.16	73.22
Zm00001d015521_P001	Maize	nucleus	72.71	71.79
HORVU7Hr1G112860.2	Barley	cytosol	15.41	45.71
HORVU7Hr1G112830.1	Barley	cytosol, nucleus	11.08	40.59
GSMUA_Achr3P13400_001	Banana	nucleus	39.49	39.17
CDX87845	Canola	cytosol, extracellular	8.35	38.81
Solyc07g005140.2.1	Tomato	nucleus	39.97	37.44
CDY70103	Canola	nucleus	34.51	37.26
CDX68803	Canola	nucleus	30.5	37.18
Bra032035.1-P	Field mustard	nucleus	34.67	37.18
CDY35371	Canola	nucleus	34.67	37.18
AT4G31920.1	Thale cress	nucleus	32.91	37.14
CDY13465	Canola	nucleus	30.5	36.68
CDX72337	Canola	nucleus	30.66	36.52
Bra023972.1-P	Field mustard	nucleus	30.34	36.49
AT2G25180.1	Thale cress	nucleus	34.83	36.41
PGSC0003DMT400020233	Potato	nucleus	39.97	35.22
HORVU7Hr1G114130.2	Barley	nucleus	27.29	34.69
Solyc12g010330.1.1	Tomato	nucleus	39.33	34.6
HORVU6Hr1G085560.5	Barley	nucleus	36.92	33.58
HORVU7Hr1G030050.1	Barley	nucleus	32.58	32.43
PGSC0003DMT400008290	Potato	nucleus	39.97	32.21
HORVU7Hr1G114450.2	Barley	nucleus	29.21	30.59
HORVU7Hr1G118290.2	Barley	nucleus	28.41	29.35
HORVU7Hr1G030000.4	Barley	nucleus	34.35	28.8
HORVU4Hr1G066480.1	Barley	nucleus	29.7	27.05
HORVU7Hr1G112890.1	Barley	nucleus	28.73	26.52
HORVU7Hr1G112840.1	Barley	nucleus	27.29	26.03
CDY49965	Canola	mitochondrion	13.8	25.52
HORVU3Hr1G086000.1	Barley	nucleus	8.99	24.56
HORVU3Hr1G114970.1	Barley	nucleus	9.95	22.63
HORVU1Hr1G064950.1	Barley	nucleus	10.75	21.97

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	EMBL:AK363760	InterPro:CheY-like_superfamily
UniProt:F2DIP2	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G028680	EnsemblPlants:HORVU6Hr1G028680.1	InterPro:Homeobox-like_sf	InterPro:IPR001789
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249	PIRSF:PIRSF036392
PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF7	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb
SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI0002006581
SEG:seg	:	:	:	:	:

Description

Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:F2DIP2]

Coordinates

chrchr6H:-:114370314..114376379

Molecular Weight (calculated)

67711.1 Da

IEP (calculated)

6.619

GRAVY (calculated)

-0.628

Length

623 amino acids

Sequence
(BLAST)

001: MTVEGRVGGG DGGGKDKFPV GMRVLAVDDD PTCLKVLENL LRRCDYHVTT TGQAATALRM LRENKDQFDL VISDVHMPDM DGFKLLELVG LEMDLPVIML
101: SANGETQTVM KGITHGACDY LLKPVRLEQL KTIWQHVIRR NTKNRGSDND DASQKGPNAE GENGGANRNK RQSRRDRDEN GDDGDDSDEN SNDNGDSSSQ
201: KKPRVVWSVE LHRKFVAAVN QLGIDKAVPK KILDLMNVEN ITRENVASHL QKYRLYLKRM SMDASRQANL VAALGGRNPA YSNMNSMDVF RHYNNAYGRY
301: RPVPTSTHSQ SNNLVARMNS PSAYGMHGLL SPQSQPLHLG HAQNNNLGTS LNDLGVNNGN LIRTAHMSTM VTGTSGNTFA NISNGAQLAP TNRAVQPLES
401: SNRQHLGRIN SSSTDSFSSF TSDSPHFPDL GRSSNTWQTA VPSNIQQLGQ NGSMSQASFH GNGPRMEPVS SYAPPSNQIT SLGNEMQNQV APLASNTLPM
501: VFNQGAAPFT FGNSTNSREA HNSNLAFSNS GINTSLPNLR IDNSIMPRQT LDGGNTGGVP SLQDGKIDQQ AVGNQLNYSN NDLVGTSGLQ RELSGGLDDI
601: VVDMFRPDND TGGIFIDTDW GLV

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.