Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 88.7 | 88.2 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 87.01 | 86.52 |
| TraesCS2D01G376300.1 | Wheat | mitochondrion | 86.44 | 86.44 |
| Os04t0520700-01 | Rice | mitochondrion | 74.01 | 75.29 |
| Zm00001d003009_P001 | Maize | mitochondrion, nucleus | 70.06 | 67.39 |
| KXG26730 | Sorghum | mitochondrion | 71.75 | 66.49 |
| Zm00001d025872_P001 | Maize | mitochondrion | 63.28 | 62.22 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 48.02 | 51.83 |
| HORVU0Hr1G016350.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 51.41 | 51.12 |
| Solyc06g075170.1.1 | Tomato | nucleus | 38.98 | 42.33 |
| KRH22888 | Soybean | cytosol, mitochondrion, nucleus | 36.72 | 42.21 |
| PGSC0003DMT400062500 | Potato | nucleus | 38.98 | 40.35 |
| PGSC0003DMT400045373 | Potato | cytosol | 33.33 | 40.14 |
| VIT_06s0004g02830.t01 | Wine grape | cytosol | 37.85 | 40.12 |
| KRH26408 | Soybean | cytosol | 32.2 | 38.26 |
| KRH29916 | Soybean | mitochondrion | 36.16 | 37.43 |
| AT3G45210.1 | Thale cress | nucleus | 31.07 | 37.16 |
| KRH25013 | Soybean | mitochondrion | 35.59 | 37.06 |
| AT5G60680.1 | Thale cress | nucleus | 33.9 | 36.81 |
| VIT_08s0040g01860.t01 | Wine grape | cytosol | 33.9 | 36.59 |
| PGSC0003DMT400020798 | Potato | plastid | 35.03 | 36.47 |
| Solyc11g069450.1.1 | Tomato | cytosol | 35.59 | 36.42 |
| Bra020237.1-P | Field mustard | nucleus | 33.9 | 36.14 |
| CDY65979 | Canola | nucleus | 32.2 | 35.85 |
| Bra002459.1-P | Field mustard | nucleus | 32.2 | 35.62 |
| Solyc10g086110.1.1 | Tomato | cytosol | 31.64 | 35.44 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 35.03 | 34.64 |
| AT5G03230.1 | Thale cress | nucleus | 32.2 | 34.34 |
| Solyc09g007790.1.1 | Tomato | cytosol | 30.51 | 34.18 |
| PGSC0003DMT400055482 | Potato | cytosol | 30.51 | 33.75 |
| CDY62461 | Canola | nucleus | 29.94 | 33.54 |
| CDX77180 | Canola | nucleus | 29.94 | 32.12 |
| AT2G28400.1 | Thale cress | mitochondrion | 29.38 | 32.1 |
| KRH19865 | Soybean | mitochondrion | 31.64 | 31.11 |
| KRG95986 | Soybean | nucleus | 26.55 | 30.92 |
| KRH67690 | Soybean | cytosol | 28.81 | 30.72 |
| Bra005738.1-P | Field mustard | cytosol | 30.51 | 30.34 |
| CDX80857 | Canola | cytosol | 30.51 | 30.17 |
| KRH32477 | Soybean | cytosol | 31.64 | 29.79 |
| CDY11244 | Canola | cytosol | 29.94 | 29.78 |
| CDX70321 | Canola | nucleus | 29.38 | 29.55 |
| CDY10396 | Canola | nucleus | 29.38 | 29.55 |
| Bra009543.1-P | Field mustard | nucleus | 28.81 | 28.98 |
| HORVU0Hr1G038250.1 | Barley | cytosol | 24.29 | 27.39 |
| HORVU2Hr1G064730.1 | Barley | cytosol | 25.42 | 25.57 |
| HORVU2Hr1G092750.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 28.81 | 25.37 |
| HORVU4Hr1G089030.1 | Barley | cytosol | 26.55 | 24.1 |
| HORVU3Hr1G083800.1 | Barley | nucleus | 27.12 | 22.33 |
| Bra035703.1-P | Field mustard | cytosol | 28.25 | 20.33 |
| HORVU2Hr1G046550.2 | Barley | plastid | 23.73 | 20.29 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G005210.2 | EnsemblPlantsGene:HORVU0Hr1G005210 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF40 | PFAM:PF04520 |
| SEG:seg | UniParc:UPI000B46D785 | UniProt:A0A287DW56 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchrUn:-:29283991..29284521
Molecular Weight (calculated)
18193.1 Da
IEP (calculated)
7.628
GRAVY (calculated)
-0.572
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXECAM AGSARSAAAK HAYRMFTPSR SAAALGSPGS AADEFDESDV WGSFGDSMPP ELARARPIPS SARAGGRKKP LDHAGAVPGS LPMSIPDWQK
101: ILGGEYRDHY AGEWELDGDD DDYSKLGAGC RSGSVVPPHE LAWRSRAASL SVHEGVGRTL KGRDLSRVRD AVWKRTG
101: ILGGEYRDHY AGEWELDGDD DDYSKLGAGC RSGSVVPPHE LAWRSRAASL SVHEGVGRTL KGRDLSRVRD AVWKRTG
001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.