Factsheet for TraesCS2A01G380100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1
TraesCS6A01G146200.3
TraesCS6A01G251400.1
TraesCS6A01G274500.1
TraesCS6B01G174400.1
TraesCS6B01G273900.1
TraesCS6B01G302000.1
TraesCS6D01G135500.3
TraesCS6D01G233200.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45210.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT3G45210.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT3G45210.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT3G45210.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT3G45210.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT3G45210.1	TraesCS6D01G233200.1	AT3G48150.1	21798944
AT5G03230.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3D01G231300.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS6A01G146200.3	AT4G31920.1	18642946
AT5G03230.1	TraesCS6B01G174400.1	AT4G31920.1	18642946
AT5G03230.1	TraesCS6D01G135500.3	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G376300.1	Wheat	mitochondrion	94.38	94.92
TraesCS2B01G397000.1	Wheat	mitochondrion	94.38	94.38
HORVU0Hr1G005210.2	Barley	cytosol, plastid	88.2	88.7
Os04t0520700-01	Rice	mitochondrion	77.53	79.31
Zm00001d003009_P001	Maize	mitochondrion, nucleus	74.72	72.28
KXG26730	Sorghum	mitochondrion	74.16	69.11
Zm00001d025872_P001	Maize	mitochondrion	65.73	65.0
TraesCS6A01G222200.1	Wheat	cytosol	53.93	54.55
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	49.44	53.66
KRH22888	Soybean	cytosol, mitochondrion, nucleus	38.76	44.81
Solyc06g075170.1.1	Tomato	nucleus	38.76	42.33
PGSC0003DMT400045373	Potato	cytosol	34.83	42.18
KRH26408	Soybean	cytosol	34.27	40.94
PGSC0003DMT400062500	Potato	nucleus	39.33	40.94
VIT_06s0004g02830.t01	Wine grape	cytosol	37.64	40.12
KRH25013	Soybean	mitochondrion	37.64	39.41
PGSC0003DMT400020798	Potato	plastid	37.08	38.82
KRH29916	Soybean	mitochondrion	37.08	38.6
Solyc11g069450.1.1	Tomato	cytosol	37.08	38.15
AT3G45210.1	Thale cress	nucleus	31.46	37.84
AT5G60680.1	Thale cress	nucleus	33.71	36.81
AT5G03230.1	Thale cress	nucleus	34.27	36.75
Bra020237.1-P	Field mustard	nucleus	34.27	36.75
Solyc10g086110.1.1	Tomato	cytosol	32.02	36.08
Solyc09g007790.1.1	Tomato	cytosol	32.02	36.08
VIT_08s0040g01860.t01	Wine grape	cytosol	33.15	35.98
CDY65979	Canola	nucleus	32.02	35.85
Bra002459.1-P	Field mustard	nucleus	32.02	35.62
PGSC0003DMT400055482	Potato	cytosol	32.02	35.62
CDY62461	Canola	nucleus	31.46	35.44
TraesCS1A01G157900.1	Wheat	mitochondrion	35.39	34.81
CDX77180	Canola	nucleus	31.46	33.94
KRG95986	Soybean	nucleus	28.65	33.55
AT2G28400.1	Thale cress	mitochondrion	30.34	33.33
KRH19865	Soybean	mitochondrion	33.71	33.33
KRH67690	Soybean	cytosol	30.34	32.53
CDX70321	Canola	nucleus	32.02	32.39
CDY10396	Canola	nucleus	32.02	32.39
Bra005738.1-P	Field mustard	cytosol	32.02	32.02
KRH32477	Soybean	cytosol	33.71	31.91
CDX80857	Canola	cytosol	32.02	31.84
Bra009543.1-P	Field mustard	nucleus	31.46	31.82
CDY11244	Canola	cytosol	31.46	31.46
TraesCS2A01G222500.1	Wheat	cytosol	28.09	29.59
TraesCS5A01G127300.1	Wheat	cytosol	24.16	27.39
TraesCS2A01G391200.1	Wheat	nucleus	28.65	25.37
TraesCS2A01G256200.1	Wheat	mitochondrion, nucleus	25.84	25.27
TraesCS5A01G539400.1	Wheat	cytosol	28.65	24.76
TraesCS2A01G295700.1	Wheat	nucleus	28.09	21.19
Bra035703.1-P	Field mustard	cytosol	29.21	21.14
TraesCS3A01G375300.1	Wheat	mitochondrion, plastid	27.53	19.92

Protein Annotations

EnsemblPlants:TraesCS2A01G380100.1	EnsemblPlantsGene:TraesCS2A01G380100	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF40	PFAM:PF04520
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:623152425..623152961

Molecular Weight (calculated)

18823.8 Da

IEP (calculated)

8.495

GRAVY (calculated)

-0.603

Length

178 amino acids

Sequence
(BLAST)

001: MAGSARSAAA KHAYRMFTPS RSAAARGSPG SAADEFDESD VWGSFGGADS GPAELARART IPSSARASGR KKPLDHAHAG PGAVPGSLPM SIPDWQKILG
101: VEYRGHHAGE WELYGDDDDD YGKLGAGCRS GAVVPPHELA WRSRAASLSV HEGVGRTLKG RDLSRVRDAV WKRTGFED

Best Arabidopsis Sequence Match ( AT5G03230.1 )
(BLAST)

001: MASRKLFFVK PKYIYPEPKP EMSDENVFEF DESDIHNLGD HQLPNSFDAK RSISISRLRR KPTKTGDSGN REITKTGSLP VNIPDWSKIL KSEYRGHAIP
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD

Arabidopsis Description

Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9LYW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.